Variant report

Variant	rs78914684
Chromosome Location	chr2:37383390-37383391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:
2	chr2:37382080..37383766-chr2:37457653..37460217,2	MCF-7	breast:
3	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37353750..37355399-chr2:37381994..37383534,2	MCF-7	breast:
6	chr2:37372644..37374273-chr2:37382533..37385006,2	K562	blood:
7	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233159	Chromatin interaction
ENSG00000224891	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326671	chr2:37383073-37385621	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37365800-37383600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:37382200-37383400	Flanking Active TSS	NHEK	skin
3	chr2:37382200-37383600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr2:37382200-37383600	Flanking Active TSS	Dnd41	blood
5	chr2:37382200-37383800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr2:37382400-37383400	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr2:37382400-37383600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr2:37382400-37383800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr2:37382400-37383800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr2:37382600-37383400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:37382600-37383400	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr2:37382600-37383400	Weak transcription	Small Intestine	intestine
13	chr2:37382600-37383600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:37382600-37383600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:37382600-37383600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:37382600-37383600	Flanking Active TSS	HMEC	breast
17	chr2:37382600-37383800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:37382600-37383800	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr2:37382600-37383800	Flanking Active TSS	HUVEC	blood vessel
20	chr2:37382600-37384400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:37382600-37384600	Active TSS	Brain Angular Gyrus	brain
22	chr2:37382800-37383400	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr2:37382800-37383400	Flanking Active TSS	HepG2	liver
24	chr2:37382800-37383600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:37382800-37383600	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr2:37382800-37383600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:37382800-37383600	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr2:37382800-37383800	Flanking Active TSS	Fetal Thymus	thymus
29	chr2:37382800-37383800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr2:37382800-37384400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:37382800-37384400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:37382800-37384400	Active TSS	GM12878-XiMat	blood
33	chr2:37382800-37384600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:37382800-37384600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr2:37382800-37384600	Active TSS	Fetal Kidney	kidney
36	chr2:37382800-37384600	Active TSS	A549	lung
37	chr2:37382800-37384800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr2:37383000-37383400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr2:37383000-37383400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:37383000-37383400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:37383000-37383400	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr2:37383000-37383400	Flanking Active TSS	Right Ventricle	heart
43	chr2:37383000-37383400	Flanking Active TSS	NHDF-Ad	bronchial
44	chr2:37383000-37383600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:37383000-37383600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr2:37383000-37383600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr2:37383000-37383600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr2:37383000-37383600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr2:37383000-37383600	Flanking Active TSS	Fetal Brain Female	brain
50	chr2:37383000-37383600	Flanking Active TSS	Fetal Intestine Large	intestine

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