Variant report

Variant	rs7893153
Chromosome Location	chr10:44392411-44392412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10751346	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078113	0.83[CHB][hapmap]
rs11238755	0.83[EUR][1000 genomes]
rs1578854	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076199	0.87[ASN][1000 genomes]
rs7096312	0.90[ASN][1000 genomes]
rs7895918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7920511	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7921967	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7893153	ZNF239	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44387800-44394600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44388800-44393800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:44388800-44393800	Weak transcription	Right Atrium	heart
4	chr10:44388800-44394000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44388800-44394000	Weak transcription	Left Ventricle	heart
6	chr10:44388800-44394200	Weak transcription	Osteobl	bone
7	chr10:44388800-44397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44389000-44394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44389000-44394800	Weak transcription	Fetal Kidney	kidney
10	chr10:44389600-44393400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:44390800-44392600	Enhancers	Fetal Heart	heart
12	chr10:44390800-44394000	Weak transcription	NHDF-Ad	bronchial
13	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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