Variant report

Variant	rs7893173
Chromosome Location	chr10:97664538-97664539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97664446..97666704-chr10:97842579..97844240,2	K562	blood:
2	chr10:97520911..97523722-chr10:97663024..97665930,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12260179	0.84[ASW][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap]
rs3897983	0.84[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97621000-97666800	Weak transcription	Gastric	stomach
2	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
3	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
4	chr10:97625400-97666400	Weak transcription	Osteobl	bone
5	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
6	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
7	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
9	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:97634400-97666800	Weak transcription	Lung	lung
12	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:97635800-97666600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:97636400-97666400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:97636800-97666400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97638600-97666600	Weak transcription	Colonic Mucosa	Colon
19	chr10:97643200-97666600	Weak transcription	Fetal Heart	heart
20	chr10:97646600-97666400	Weak transcription	HSMM	muscle
21	chr10:97648000-97666400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:97649400-97666600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:97650000-97666600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:97651800-97666400	Weak transcription	A549	lung
25	chr10:97652200-97666400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:97653800-97666600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:97654000-97664800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:97654000-97665000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97654400-97664800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:97654400-97665000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97655200-97666600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:97655800-97666600	Weak transcription	HSMMtube	muscle
33	chr10:97656400-97665000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:97656400-97666400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:97656400-97666800	Weak transcription	Psoas Muscle	Psoas
36	chr10:97656600-97666400	Weak transcription	Fetal Brain Male	brain
37	chr10:97656600-97666600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:97656800-97666400	Weak transcription	Aorta	Aorta
39	chr10:97657000-97666000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:97657200-97666400	Weak transcription	Brain Anterior Caudate	brain
41	chr10:97657400-97666400	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:97657400-97666400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:97657800-97666400	Weak transcription	Fetal Kidney	kidney
44	chr10:97658000-97666400	Weak transcription	NHDF-Ad	bronchial
45	chr10:97658000-97666600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:97659000-97666400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:97659200-97665200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97659200-97666600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:97659600-97664800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:97659800-97664800	Strong transcription	Primary hematopoietic stem cells	blood

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