Variant report

Variant	rs7893190
Chromosome Location	chr10:21584244-21584245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11813176	0.83[ASN][1000 genomes]
rs11813592	0.83[ASN][1000 genomes]
rs12241514	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12259952	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13376997	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21582800-21586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:21583000-21584400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21583000-21584800	Weak transcription	Esophagus	oesophagus
4	chr10:21583000-21585200	Weak transcription	Fetal Brain Female	brain
5	chr10:21583000-21586600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:21583200-21584800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:21583200-21586600	Weak transcription	Placenta	Placenta
8	chr10:21583400-21586600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:21583400-21586800	Weak transcription	Fetal Kidney	kidney
10	chr10:21583400-21593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:21583600-21584400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:21583600-21584600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:21583600-21584600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:21583600-21584600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:21583600-21584800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:21583600-21585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:21583600-21585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:21583600-21587600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:21583600-21588400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:21583600-21588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:21583800-21585600	Enhancers	A549	lung
22	chr10:21583800-21585800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:21583800-21586000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:21583800-21586200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:21584000-21586200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:21584000-21586200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:21584000-21586200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:21584200-21584600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:21584200-21585000	Enhancers	NHEK	skin
30	chr10:21584200-21585200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:21584200-21585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:21584200-21585600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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