Variant report

Variant	rs7894820
Chromosome Location	chr10:38342444-38342445
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12098614	0.83[AFR][1000 genomes]
rs28528184	1.00[AFR][1000 genomes]
rs35404825	1.00[AFR][1000 genomes]
rs7088170	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38301800-38344400	Weak transcription	Hela-S3	cervix
2	chr10:38307600-38346600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:38307800-38343600	Weak transcription	Small Intestine	intestine
4	chr10:38307800-38344000	Weak transcription	Stomach Mucosa	stomach
5	chr10:38309800-38344200	Weak transcription	NH-A	brain
6	chr10:38314600-38342800	Weak transcription	Brain Substantia Nigra	brain
7	chr10:38315000-38342800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:38316000-38342600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:38316600-38343600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:38322000-38342600	Weak transcription	Right Ventricle	heart
11	chr10:38322400-38342800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:38323800-38343000	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:38324600-38343800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:38325200-38344000	Weak transcription	Osteobl	bone
15	chr10:38325800-38343200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:38326000-38342800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:38326600-38349200	Weak transcription	HepG2	liver
18	chr10:38327800-38344000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:38331600-38342600	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:38334000-38343000	Weak transcription	Brain Germinal Matrix	brain
21	chr10:38334000-38350600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr10:38334800-38342600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:38335200-38342600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:38335200-38342800	Weak transcription	Fetal Kidney	kidney
25	chr10:38336200-38351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:38336400-38344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:38337200-38342800	Weak transcription	Placenta	Placenta
28	chr10:38338000-38348200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr10:38338200-38348800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:38339200-38347800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr10:38339600-38343800	Weak transcription	HSMMtube	muscle
32	chr10:38339800-38342600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:38339800-38344000	Weak transcription	Esophagus	oesophagus
34	chr10:38339800-38344000	Weak transcription	Lung	lung
35	chr10:38340000-38342800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:38340200-38342800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:38340800-38345800	ZNF genes & repeats	Dnd41	blood
38	chr10:38340800-38347400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr10:38340800-38348400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:38340800-38351200	ZNF genes & repeats	Liver	Liver
41	chr10:38340800-38351600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr10:38340800-38353400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr10:38341000-38347000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
44	chr10:38341200-38346800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
45	chr10:38341200-38351200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr10:38341200-38353800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:38341400-38346400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
48	chr10:38341400-38346800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
49	chr10:38341400-38348200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
50	chr10:38341600-38346400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

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