Variant report

Variant	rs7895702
Chromosome Location	chr10:99285370-99285371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99278192..99281004-chr10:99284168..99285856,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34716440	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917774	0.87[ASN][1000 genomes]
rs4919105	0.87[ASN][1000 genomes]
rs66521603	0.81[ASN][1000 genomes]
rs7075656	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:99277800-99301800	Weak transcription	Gastric	stomach
4	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
6	chr10:99278400-99289600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
8	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:99279800-99287200	Enhancers	Lung	lung
10	chr10:99281200-99291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:99282200-99289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:99282200-99289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
15	chr10:99282400-99291200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
18	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:99284400-99285400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:99284400-99287600	Enhancers	HepG2	liver
21	chr10:99284600-99286400	Enhancers	Psoas Muscle	Psoas
22	chr10:99284800-99285800	Weak transcription	Ovary	ovary
23	chr10:99284800-99289400	Weak transcription	Esophagus	oesophagus
24	chr10:99284800-99291800	Weak transcription	Brain Anterior Caudate	brain
25	chr10:99284800-99292000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:99285000-99286800	Weak transcription	Left Ventricle	heart
27	chr10:99285000-99289400	Weak transcription	Right Ventricle	heart
28	chr10:99285000-99291000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:99285000-99291400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:99285000-99293000	Weak transcription	Brain Substantia Nigra	brain
31	chr10:99285200-99285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:99285200-99285600	Weak transcription	Adipose Nuclei	Adipose
33	chr10:99285200-99285600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:99285200-99286000	Enhancers	Liver	Liver
35	chr10:99285200-99289600	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:99285200-99298600	Weak transcription	Right Atrium	heart

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