Variant report

Variant	rs7895774
Chromosome Location	chr10:6510534-6510535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6505761..6513673-chr10:6513705..6518581,11	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11597105	0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs11598313	0.83[ASN][1000 genomes]
rs17156356	1.00[YRI][hapmap]
rs3793727	0.81[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3793730	0.90[CHB][hapmap];1.00[CHD][hapmap];0.80[ASN][1000 genomes]
rs4748096	0.84[EUR][1000 genomes]
rs4750517	0.81[CEU][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4750523	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56269853	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781749	0.81[ASN][1000 genomes]
rs72781763	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72781765	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6493400-6516200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:6496200-6511600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:6496200-6513000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:6496200-6514000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6496200-6514200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:6496200-6514600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:6496600-6539200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:6497600-6513200	Strong transcription	Primary T cells from cord blood	blood
9	chr10:6498400-6537000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:6498600-6512000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:6498600-6518800	Weak transcription	Fetal Stomach	stomach
12	chr10:6499000-6527800	Weak transcription	Pancreas	Pancrea
13	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
14	chr10:6501000-6513800	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:6501600-6527200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:6501800-6511000	Weak transcription	Aorta	Aorta
17	chr10:6501800-6513800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:6501800-6513800	Strong transcription	Fetal Thymus	thymus
19	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:6502000-6511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:6502200-6518800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:6503000-6513000	Weak transcription	Psoas Muscle	Psoas
23	chr10:6503000-6533000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:6503200-6513600	Strong transcription	Dnd41	blood
25	chr10:6503200-6513800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:6503200-6516000	Weak transcription	Brain Angular Gyrus	brain
27	chr10:6504200-6517200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:6504400-6518200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:6504600-6524200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:6506000-6515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:6506200-6516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:6506200-6516200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:6506200-6520400	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:6507600-6515400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:6507800-6511200	Weak transcription	K562	blood
36	chr10:6508600-6511800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:6508800-6512800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:6508800-6514200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:6509200-6541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:6509400-6511600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:6509600-6510800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:6509800-6514600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:6509800-6517600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:6509800-6533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:6510000-6510800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:6510000-6511600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:6510000-6511800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:6510000-6512800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:6510000-6516000	Weak transcription	Fetal Intestine Large	intestine
50	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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