Variant report

Variant	rs789737
Chromosome Location	chr12:64538069-64538070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs699630	1.00[AFR][1000 genomes]
rs699638	1.00[YRI][hapmap]
rs790013	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64498400-64538400	Weak transcription	Small Intestine	intestine
2	chr12:64511200-64539400	Weak transcription	HepG2	liver
3	chr12:64522200-64541200	Weak transcription	Colonic Mucosa	Colon
4	chr12:64522400-64541200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:64522800-64540800	Weak transcription	Fetal Kidney	kidney
6	chr12:64524400-64541200	Weak transcription	Gastric	stomach
7	chr12:64528000-64538400	Weak transcription	Fetal Heart	heart
8	chr12:64528000-64540800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:64528000-64541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:64528000-64541400	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:64528600-64540400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:64531600-64554400	Weak transcription	NH-A	brain
13	chr12:64533800-64541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:64535400-64538400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:64535400-64539600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:64535400-64539600	Strong transcription	Fetal Stomach	stomach
17	chr12:64535400-64540000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:64535400-64540400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:64535400-64541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:64535400-64542400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:64535600-64538200	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:64535600-64539800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:64535600-64540000	Strong transcription	Fetal Intestine Large	intestine
24	chr12:64535600-64540200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:64535600-64540400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr12:64535600-64540400	Strong transcription	NHDF-Ad	bronchial
27	chr12:64535600-64540600	Strong transcription	Fetal Brain Female	brain
28	chr12:64535600-64540800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:64535600-64541000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:64535600-64541400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:64535600-64541400	Strong transcription	HSMMtube	muscle
32	chr12:64535800-64539800	Strong transcription	Fetal Muscle Leg	muscle
33	chr12:64535800-64540400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr12:64535800-64540400	Strong transcription	Osteobl	bone
35	chr12:64536000-64538200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:64536000-64538200	Strong transcription	A549	lung
37	chr12:64536000-64539800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr12:64536400-64541200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:64536400-64541200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:64536400-64541200	Weak transcription	Brain Angular Gyrus	brain
41	chr12:64537000-64539000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr12:64537000-64541400	Weak transcription	Liver	Liver
43	chr12:64537000-64542600	Weak transcription	Esophagus	oesophagus
44	chr12:64537000-64545600	Weak transcription	Brain Substantia Nigra	brain
45	chr12:64537200-64539000	Weak transcription	NHLF	lung
46	chr12:64537200-64546400	Weak transcription	Stomach Mucosa	stomach
47	chr12:64537400-64539000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr12:64537400-64539000	Weak transcription	HSMM	muscle
49	chr12:64537400-64539600	Weak transcription	Placenta	Placenta
50	chr12:64537400-64540400	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links