Variant report

Variant	rs7897460
Chromosome Location	chr10:25876207-25876208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10764563	0.83[AFR][1000 genomes]
rs10764564	0.83[AFR][1000 genomes]
rs10764565	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11014630	0.85[AFR][1000 genomes]
rs11014631	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs1932147	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs58254885	0.83[AFR][1000 genomes]
rs7089450	0.97[AFR][1000 genomes]
rs7916181	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25876200-25876800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25876200-25877000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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