Variant report

Variant	rs78975511
Chromosome Location	chr11:3982356-3982357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv2586241	chr11:3981859-3983419	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3468274	chr11:3982275-3982933	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3394565	chr11:3982277-3983005	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2151404	chr11:3982291-3983047	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3516459	chr11:3982297-3982911	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3516460	chr11:3982302-3983004	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3468286	chr11:3982356-3982876	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3516461	chr11:3982356-3982876	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:3970800-3988600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:3971400-3988400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:3972800-3988800	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:3973000-3988600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:3973200-3982400	Weak transcription	Primary B cells from cord blood	blood
7	chr11:3973200-3984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:3973200-3993200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:3973200-4008400	Weak transcription	Fetal Lung	lung
10	chr11:3973600-3993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:3974400-3983400	Weak transcription	Small Intestine	intestine
12	chr11:3974800-3988200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:3974800-3988800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:3975000-4006000	Weak transcription	Right Ventricle	heart
15	chr11:3975600-3988600	Weak transcription	Dnd41	blood
16	chr11:3975600-3988800	Weak transcription	Aorta	Aorta
17	chr11:3975800-3984800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:3975800-3988800	Weak transcription	Esophagus	oesophagus
19	chr11:3977400-3983000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:3977400-3985400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:3977400-3988600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:3979400-3982600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:3979400-3982600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:3979400-3983400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:3979600-3982400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:3979600-3982600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:3979600-3982600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:3979600-3982600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:3979600-3982600	Enhancers	HMEC	breast
30	chr11:3979600-3982800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:3979600-3982800	Enhancers	NHDF-Ad	bronchial
32	chr11:3979800-3982600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:3979800-3982600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:3980200-3982600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:3980200-3982600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:3980400-3983400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:3980400-3984000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr11:3980600-3982800	Enhancers	Primary T cells from cord blood	blood
39	chr11:3980600-3984000	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr11:3980600-3988800	Weak transcription	GM12878-XiMat	blood
41	chr11:3980600-3994200	Weak transcription	Fetal Stomach	stomach
42	chr11:3981000-3982600	Enhancers	HepG2	liver
43	chr11:3981000-3988800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:3981200-3983400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:3981200-3983400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:3981200-3983400	Weak transcription	Thymus	Thymus
47	chr11:3981200-3983400	Weak transcription	NHLF	lung
48	chr11:3981200-3984800	Weak transcription	K562	blood
49	chr11:3981200-3990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:3981400-3982600	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links