Variant report

Variant	rs7898103
Chromosome Location	chr10:23736734-23736735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23734822..23737617-chr10:23738406..23741055,2	MCF-7	breast:
2	chr10:23735979..23737585-chr10:23742563..23744622,2	MCF-7	breast:
3	chr10:23732386..23735333-chr10:23736238..23738738,2	MCF-7	breast:
4	chr10:23732163..23734973-chr10:23736467..23739152,3	K562	blood:
5	chr10:23726848..23728712-chr10:23736442..23738987,2	K562	blood:
6	chr10:23732769..23734965-chr10:23736236..23739152,2	K562	blood:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11013424	1.00[ASN][1000 genomes]
rs12355855	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
2	chr10:23729800-23738400	Weak transcription	Lung	lung
3	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
5	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:23731600-23737400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
8	chr10:23731800-23738400	Weak transcription	Aorta	Aorta
9	chr10:23731800-23738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:23732000-23737600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:23732000-23737800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:23732000-23737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:23732000-23738000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:23732000-23738200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:23732000-23738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:23732000-23740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:23732200-23737400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:23732200-23737400	Weak transcription	Primary T cells from cord blood	blood
21	chr10:23732200-23737600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:23732200-23737800	Weak transcription	Brain Angular Gyrus	brain
23	chr10:23732200-23738400	Weak transcription	Right Atrium	heart
24	chr10:23732200-23739200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:23732200-23747800	Weak transcription	NHEK	skin
26	chr10:23732400-23737400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:23732400-23737400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:23732400-23737600	Weak transcription	GM12878-XiMat	blood
29	chr10:23732400-23737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:23732400-23741200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:23732600-23740400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:23732600-23740400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:23732800-23738400	Weak transcription	Spleen	Spleen
35	chr10:23732800-23741000	Weak transcription	Brain Substantia Nigra	brain
36	chr10:23732800-23744000	Weak transcription	Right Ventricle	heart
37	chr10:23733000-23736800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:23733000-23738200	Weak transcription	Ovary	ovary
39	chr10:23733000-23740000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:23733000-23740400	Weak transcription	Fetal Brain Female	brain
41	chr10:23733000-23740600	Weak transcription	Fetal Intestine Small	intestine
42	chr10:23733000-23741000	Weak transcription	Psoas Muscle	Psoas
43	chr10:23733200-23737400	Weak transcription	Fetal Lung	lung
44	chr10:23733200-23738600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:23733400-23737600	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:23733600-23736800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:23733600-23738600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:23734400-23737200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:23734600-23737200	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:23734600-23738000	Weak transcription	Primary hematopoietic stem cells	blood

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