Variant report

Variant	rs78981884
Chromosome Location	chr4:147207779-147207780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147207605..147209216-chr4:147213050..147215531,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3332743	chr4:147204602-147209500	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3425492	chr4:147204802-147209400	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3429202	chr4:147205102-147209400	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3431014	chr4:147206206-147208023	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv822766	chr4:147206279-147208554	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv14226	chr4:147206826-147208457	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv8434	chr4:147207373-147208075	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3444745	chr4:147207515-147208039	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3397255	chr4:147207758-147207990	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1004247	chr4:147207767-147208266	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147166000-147207800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:147167000-147217600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:147167400-147209000	Weak transcription	Ovary	ovary
4	chr4:147174400-147231200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:147174800-147207800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:147174800-147218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:147175400-147225400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:147177400-147213400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:147178200-147207800	Weak transcription	Primary B cells from cord blood	blood
10	chr4:147179400-147217200	Weak transcription	Left Ventricle	heart
11	chr4:147179600-147214200	Weak transcription	Dnd41	blood
12	chr4:147180400-147233200	Weak transcription	Liver	Liver
13	chr4:147180600-147208200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:147186600-147212800	Weak transcription	Psoas Muscle	Psoas
15	chr4:147188400-147215200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:147197400-147213200	Weak transcription	K562	blood
17	chr4:147198000-147224000	Weak transcription	Fetal Intestine Small	intestine
18	chr4:147201000-147224800	Weak transcription	HMEC	breast
19	chr4:147201000-147225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:147201000-147249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:147201600-147209600	Weak transcription	NH-A	brain
22	chr4:147201600-147214600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:147204000-147220800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:147204200-147208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:147204200-147208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:147204200-147211400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:147204400-147208400	Weak transcription	NHEK	skin
28	chr4:147204600-147209800	Weak transcription	Brain Substantia Nigra	brain
29	chr4:147205600-147207800	Weak transcription	Brain Angular Gyrus	brain
30	chr4:147205600-147207800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:147205600-147208200	Weak transcription	HUVEC	blood vessel
32	chr4:147205600-147211600	Weak transcription	GM12878-XiMat	blood
33	chr4:147205600-147214000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:147205800-147208800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:147205800-147208800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr4:147205800-147217600	Weak transcription	Fetal Brain Female	brain
37	chr4:147206000-147216400	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:147206200-147213800	Weak transcription	Placenta	Placenta
39	chr4:147206200-147217600	Weak transcription	Fetal Brain Male	brain
40	chr4:147206200-147225400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:147206400-147210200	Strong transcription	Primary T cells from cord blood	blood
42	chr4:147206600-147208400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:147206600-147208400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:147206800-147208200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr4:147206800-147208200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:147206800-147208200	Strong transcription	Spleen	Spleen
47	chr4:147206800-147208400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:147206800-147209400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:147206800-147209400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:147206800-147209800	Strong transcription	Primary T cells fromperipheralblood	blood

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