Variant report

Variant	rs7898197
Chromosome Location	chr10:26503410-26503411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr10:26502895-26503415	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:26502119-26508104	H1-neurons	neurons:	n/a	n/a
3	NANOG	chr10:26502967-26503420	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr10:26503373-26508237	H1-neurons	neurons:	n/a	n/a
5	JUND	chr10:26502996-26503541	H1-hESC	embryonic stem cell:	n/a	chr10:26503176-26503185 chr10:26503126-26503140
6	BACH1	chr10:26503004-26503986	H1-hESC	embryonic stem cell:	n/a	n/a
7	REST	chr10:26501382-26511273	H1-neurons	neurons:	n/a	chr10:26506086-26506100 chr10:26505231-26505240 chr10:26505220-26505240 chr10:26503893-26503900 chr10:26505220-26505240 chr10:26506967-26506980 chr10:26508383-26508401 chr10:26505195-26505208 chr10:26505220-26505234 chr10:26507108-26507121 chr10:26505222-26505232 chr10:26505227-26505240 chr10:26505224-26505237 chr10:26505220-26505240 chr10:26505221-26505239 chr10:26505224-26505237 chr10:26502538-26502551
8	SIN3A	chr10:26502684-26506045	H1-hESC	embryonic stem cell:	n/a	chr10:26505222-26505231 chr10:26505431-26505444 chr10:26503916-26503926 chr10:26505045-26505054 chr10:26505221-26505235 chr10:26505227-26505240

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABI1-10	chr10:26501467-26505235	NONHSAT011822

Variant related genes	Relation type
GAD2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7069695	0.84[AFR][1000 genomes]
rs73594320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190620	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26501000-26503800	Weak transcription	Gastric	stomach
2	chr10:26502000-26504200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:26502600-26505000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr10:26502600-26505200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr10:26502800-26503600	Bivalent Enhancer	Dnd41	blood
6	chr10:26502800-26508600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:26503000-26503600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:26503000-26503600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:26503000-26507800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:26503200-26505400	Active TSS	Brain Germinal Matrix	brain
11	chr10:26503400-26503600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr10:26503400-26504000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr10:26503400-26504000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:26503400-26504000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
15	chr10:26503400-26504000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26503400-26504200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:26503400-26504200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr10:26503400-26504200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr10:26503400-26504400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
20	chr10:26503400-26504400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:26503400-26504600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
22	chr10:26503400-26504600	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr10:26503400-26505000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood

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