Variant report

Variant	rs7898983
Chromosome Location	chr10:4692213-4692214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4690190..4692263-chr10:4776105..4778922,2	MCF-7	breast:
2	chr10:4554767..4555670-chr10:4691719..4692590,2	MCF-7	breast:
3	chr10:4691020..4693765-chr10:4695253..4697070,2	K562	blood:
4	chr10:4691378..4694078-chr10:4702195..4704638,2	MCF-7	breast:
5	chr10:4683804..4685343-chr10:4691589..4693258,2	MCF-7	breast:
6	chr10:4586883..4588795-chr10:4691830..4693502,2	MCF-7	breast:
7	chr10:3805083..3807904-chr10:4690931..4693769,2	MCF-7	breast:
8	chr10:4690809..4692527-chr10:4700264..4703042,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C2-4	chr10:4692148-4693395	NONHSAT011101
2	lnc-AKR1E2-8	chr10:4692174-4692303	NONHSAT011105

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10508286	0.87[YRI][hapmap]
rs10904310	0.86[YRI][hapmap]
rs10904313	0.83[YRI][hapmap]
rs11252641	0.83[YRI][hapmap]
rs11252642	0.82[YRI][hapmap]
rs12782668	0.80[YRI][hapmap]
rs1498270	0.83[YRI][hapmap]
rs1838239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088500	0.86[YRI][hapmap]
rs2165953	0.83[YRI][hapmap]
rs2165955	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4680800-4692800	Weak transcription	Aorta	Aorta
4	chr10:4682800-4693800	Weak transcription	NHEK	skin
5	chr10:4682800-4694000	Weak transcription	HMEC	breast
6	chr10:4685800-4692600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:4688000-4692600	Weak transcription	Fetal Kidney	kidney
8	chr10:4688800-4694800	Enhancers	Dnd41	blood
9	chr10:4689400-4692400	Weak transcription	NH-A	brain
10	chr10:4689400-4692600	Weak transcription	HSMM	muscle
11	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:4689800-4692400	Weak transcription	Adipose Nuclei	Adipose
13	chr10:4690000-4697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:4691000-4693200	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:4691400-4692600	Weak transcription	Left Ventricle	heart
16	chr10:4691400-4692800	Weak transcription	Psoas Muscle	Psoas
17	chr10:4691600-4692600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:4691600-4692600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:4691600-4692800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:4691600-4694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:4691800-4693400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr10:4692000-4693000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:4692000-4693000	Enhancers	Rectal Smooth Muscle	rectum
24	chr10:4692000-4693200	Enhancers	Fetal Brain Male	brain
25	chr10:4692000-4693200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:4692200-4692400	Flanking Active TSS	HUVEC	blood vessel
27	chr10:4692200-4692600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:4692200-4692800	Enhancers	Colon Smooth Muscle	Colon
29	chr10:4692200-4693000	Enhancers	Fetal Stomach	stomach
30	chr10:4692200-4693000	Enhancers	Stomach Mucosa	stomach
31	chr10:4692200-4693000	Flanking Active TSS	Osteobl	bone
32	chr10:4692200-4693200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:4692200-4693200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:4692200-4693200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:4692200-4693400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:4692200-4694800	Enhancers	NHDF-Ad	bronchial
37	chr10:4692200-4694800	Enhancers	NHLF	lung

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