Variant report

Variant	rs7899030
Chromosome Location	chr10:4258217-4258218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11813500	1.00[AMR][1000 genomes]
rs11815971	1.00[AMR][1000 genomes]
rs11819442	1.00[AMR][1000 genomes]
rs17132623	1.00[AMR][1000 genomes]
rs17132691	1.00[AMR][1000 genomes]
rs17132695	1.00[AMR][1000 genomes]
rs17132748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4245400-4259400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:4251600-4259800	Weak transcription	Aorta	Aorta
3	chr10:4255000-4258400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:4255000-4263200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:4256000-4263400	Weak transcription	HSMM	muscle
6	chr10:4256800-4259400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:4256800-4259600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:4256800-4259800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:4257000-4258400	Enhancers	Fetal Intestine Small	intestine
10	chr10:4257000-4258600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:4257000-4258600	Enhancers	NHDF-Ad	bronchial
12	chr10:4257000-4259200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:4257000-4259400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr10:4257000-4259600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:4257000-4259800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:4257000-4259800	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:4257000-4260400	Enhancers	Fetal Heart	heart
18	chr10:4257200-4260400	Enhancers	Small Intestine	intestine
19	chr10:4257400-4259400	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:4257400-4259400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:4257400-4259800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:4257400-4260000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:4257400-4282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:4257600-4258400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:4257600-4258400	Weak transcription	Colonic Mucosa	Colon
26	chr10:4257600-4258600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:4257600-4259000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:4257600-4259800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:4257800-4259600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:4257800-4259800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:4258000-4258400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:4258000-4259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:4258000-4259200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:4258000-4260800	Weak transcription	HSMMtube	muscle

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