Variant report

Variant	rs7902566
Chromosome Location	chr10:6373871-6373872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6362567..6365351-chr10:6373129..6375526,2	MCF-7	breast:
2	chr10:6373404..6376314-chr10:6384140..6386945,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL137145.1-1	chr10:6373463-6374700	XLOC_008367

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10796018	0.82[EUR][1000 genomes]
rs10906288	0.82[EUR][1000 genomes]
rs11258158	0.85[EUR][1000 genomes]
rs1535694	0.82[ASN][1000 genomes]
rs1535695	0.81[ASN][1000 genomes]
rs1535696	0.82[EUR][1000 genomes]
rs2021950	0.84[EUR][1000 genomes]
rs2021951	0.82[ASN][1000 genomes]
rs2031222	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2224781	0.83[ASN][1000 genomes]
rs4748017	0.83[EUR][1000 genomes]
rs4750272	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6602623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087682	0.83[ASN][1000 genomes]
rs7896561	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7917852	0.84[AMR][1000 genomes]
rs7923615	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:6356200-6377600	Weak transcription	Ovary	ovary
3	chr10:6357200-6397400	Weak transcription	Pancreas	Pancrea
4	chr10:6361400-6375200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:6361600-6374600	Weak transcription	Dnd41	blood
6	chr10:6362800-6382600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:6370000-6374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:6371200-6377600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:6371400-6385200	Weak transcription	Spleen	Spleen
10	chr10:6371600-6374600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:6371600-6374600	Weak transcription	HSMMtube	muscle
12	chr10:6371600-6377600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:6371600-6389800	Weak transcription	Aorta	Aorta
14	chr10:6371800-6389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:6372000-6387800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:6372200-6375000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:6372400-6374600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr10:6372400-6375000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:6372400-6377600	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:6373200-6374400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:6373400-6374000	Strong transcription	Adipose Nuclei	Adipose
22	chr10:6373800-6384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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