Variant report

Variant	rs7903083
Chromosome Location	chr10:118143363-118143364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10787665	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10885919	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11197641	0.86[EUR][1000 genomes]
rs11197647	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11197652	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11197653	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12243530	0.95[ASN][1000 genomes]
rs17094652	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1897517	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4593919	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7071032	0.86[EUR][1000 genomes]
rs7071948	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7072242	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7093993	0.96[EUR][1000 genomes]
rs7912088	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046807	chr10:118105880-118162086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118142000-118144000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:118142200-118145000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:118142800-118143400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:118143000-118143800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:118143200-118143400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:118143200-118143600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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