Variant report

Variant	rs79039111
Chromosome Location	chr4:54960070-54960071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv594202	chr4:54943432-55011123	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594203	chr4:54960005-55030375	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54958600-54960200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:54958600-54960200	Bivalent Enhancer	Fetal Heart	heart
3	chr4:54958600-54960400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr4:54958600-54960400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:54958600-54960600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr4:54958800-54960200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:54958800-54960200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
8	chr4:54958800-54960200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:54958800-54960200	Bivalent Enhancer	Fetal Thymus	thymus
10	chr4:54958800-54960200	Bivalent Enhancer	GM12878-XiMat	blood
11	chr4:54958800-54960400	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr4:54958800-54960400	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr4:54958800-54960600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
14	chr4:54958800-54962800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:54958800-54965800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:54959000-54960600	Weak transcription	HSMMtube	muscle
17	chr4:54959000-54964400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:54959200-54960400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr4:54959400-54960200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
20	chr4:54959400-54960200	Bivalent Enhancer	Lung	lung
21	chr4:54959400-54960200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
22	chr4:54959400-54960200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr4:54959400-54960400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
24	chr4:54959400-54960400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr4:54959400-54960400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
26	chr4:54959400-54960400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
27	chr4:54959400-54960800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr4:54959600-54960400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
29	chr4:54959600-54965600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:54959800-54960200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
31	chr4:54959800-54960400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
32	chr4:54959800-54960400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:54959800-54961600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr4:54960000-54960200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:54960000-54960200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:54960000-54960200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr4:54960000-54960200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
38	chr4:54960000-54960200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
39	chr4:54960000-54960200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:54960000-54960200	Bivalent Enhancer	Fetal Stomach	stomach
41	chr4:54960000-54960200	Enhancers	Pancreas	Pancrea
42	chr4:54960000-54960400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:54960000-54960600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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