Variant report

Variant	rs7904343
Chromosome Location	chr10:26989406-26989407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26988675..26990300-chr10:27168290..27169944,2	K562	blood:
2	chr10:26986198..26989615-chr10:27022506..27024765,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10764636	0.81[EUR][1000 genomes]
rs11015223	0.91[ASN][1000 genomes]
rs11015232	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015245	0.81[EUR][1000 genomes]
rs12254548	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12415035	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1809359	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1960383	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35459290	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808913	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68159164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069431	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100327	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71483808	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7896301	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv1798973	chr10:26968171-27001814	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-26989800	Enhancers	Lung	lung
2	chr10:26987600-26990200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:26987600-26990400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:26987600-26990400	Weak transcription	Primary T cells from cord blood	blood
5	chr10:26987600-26990800	Weak transcription	Primary B cells from cord blood	blood
6	chr10:26987600-26990800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr10:26987600-26991000	Enhancers	Liver	Liver
8	chr10:26987600-26994200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:26987600-26994400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:26987600-26994800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:26987600-26994800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:26987600-26994800	Weak transcription	Esophagus	oesophagus
13	chr10:26987600-26994800	Weak transcription	Ovary	ovary
14	chr10:26987600-26994800	Weak transcription	HSMMtube	muscle
15	chr10:26987600-26995000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:26987600-26995000	Weak transcription	Gastric	stomach
17	chr10:26987600-26995000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:26987600-26996200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:26987600-26996200	Weak transcription	Pancreas	Pancrea
20	chr10:26987600-26996800	Weak transcription	Aorta	Aorta
21	chr10:26987600-27010400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
23	chr10:26987800-26990400	Weak transcription	Brain Germinal Matrix	brain
24	chr10:26987800-26994800	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:26987800-26994800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:26987800-26995400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:26987800-27010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:26987800-27020400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
30	chr10:26988000-26990200	Weak transcription	Right Ventricle	heart
31	chr10:26988000-26991200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:26988000-26991800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:26988000-26993800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:26988000-26994400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:26988000-26994600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:26988000-26994600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:26988000-26994600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:26988000-26994600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:26988000-26994600	Weak transcription	Adipose Nuclei	Adipose
40	chr10:26988000-26994800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:26988000-26994800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:26988000-26994800	Weak transcription	Fetal Brain Female	brain
43	chr10:26988000-26994800	Weak transcription	Fetal Lung	lung
44	chr10:26988000-26994800	Weak transcription	Spleen	Spleen
45	chr10:26988000-26995000	Weak transcription	NHLF	lung
46	chr10:26988000-26995200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:26988000-26995400	Weak transcription	Placenta	Placenta
48	chr10:26988000-26995800	Weak transcription	Brain Angular Gyrus	brain
49	chr10:26988000-26996200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:26988000-26996400	Weak transcription	HSMM	muscle

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