Variant report

Variant	rs7904547
Chromosome Location	chr10:23340868-23340869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23339524..23342053-chr10:23345304..23346987,2	MCF-7	breast:
2	chr10:23297348..23299229-chr10:23338306..23340971,2	K562	blood:
3	chr10:22972373..22974105-chr10:23339764..23342277,2	K562	blood:
4	chr10:23276792..23280787-chr10:23340649..23346324,8	K562	blood:
5	chr10:23286320..23291300-chr10:23340827..23345371,11	K562	blood:
6	chr10:22999547..23001404-chr10:23340712..23342548,2	K562	blood:
7	chr10:23284388..23291311-chr10:23340827..23345972,11	K562	blood:
8	chr10:22970714..22972337-chr10:23340303..23342897,2	K562	blood:
9	chr10:23335001..23336603-chr10:23340488..23342583,2	MCF-7	breast:
10	chr10:23297640..23302791-chr10:23338306..23344811,10	K562	blood:
11	chr10:23282511..23285269-chr10:23340360..23342664,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223131	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11013271	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56311162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57231755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723758	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23335200-23341400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:23335200-23341800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:23336600-23341800	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:23336600-23348800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:23336800-23342000	Weak transcription	Fetal Stomach	stomach
6	chr10:23337000-23341200	Weak transcription	Stomach Mucosa	stomach
7	chr10:23337000-23341800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:23337400-23342200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:23339600-23344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:23340000-23343400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:23340200-23343000	Enhancers	Placenta	Placenta
12	chr10:23340400-23341400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr10:23340400-23341400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:23340400-23341800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:23340400-23341800	Flanking Active TSS	K562	blood
16	chr10:23340400-23343000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:23340600-23341200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:23340600-23341400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:23340600-23342200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:23340600-23342600	Enhancers	Hela-S3	cervix
21	chr10:23340600-23343000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:23340600-23345800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:23340800-23341000	Enhancers	Fetal Kidney	kidney
24	chr10:23340800-23341000	Enhancers	NHEK	skin
25	chr10:23340800-23341600	Weak transcription	HSMMtube	muscle
26	chr10:23340800-23342400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr10:23340800-23342600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links