Variant report

Variant	rs7905000
Chromosome Location	chr10:61342102-61342103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12264752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1909628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1909630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1909633	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57834926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907910	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340000-61342600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:61340200-61342600	Weak transcription	Fetal Lung	lung
3	chr10:61340200-61342600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
6	chr10:61340400-61342400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:61341000-61346000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:61341400-61342200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:61341400-61342400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:61341400-61343000	Enhancers	Brain Angular Gyrus	brain
11	chr10:61341600-61342200	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:61341600-61342600	Weak transcription	Brain Germinal Matrix	brain
13	chr10:61341600-61343200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:61341800-61342200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:61341800-61342800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:61341800-61342800	Enhancers	Brain Anterior Caudate	brain
17	chr10:61341800-61342800	Enhancers	Brain Substantia Nigra	brain
18	chr10:61341800-61343000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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