Variant report

Variant	rs7905172
Chromosome Location	chr10:58778021-58778022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10763447	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10763450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763452	0.90[ASN][1000 genomes]
rs10825962	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10825964	0.93[ASN][1000 genomes]
rs10825965	0.93[ASN][1000 genomes]
rs10825966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825968	0.91[AFR][1000 genomes]
rs11005610	0.92[ASN][1000 genomes]
rs11593406	0.91[ASN][1000 genomes]
rs12359387	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2393136	0.91[AFR][1000 genomes]
rs34851794	0.91[ASN][1000 genomes]
rs4245034	0.92[ASN][1000 genomes]
rs4935684	0.93[ASN][1000 genomes]
rs4935685	0.93[ASN][1000 genomes]
rs7917221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895511	chr10:58640650-58789387	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1053600	chr10:58730645-58881832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58776200-58779800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:58777000-58779200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:58777200-58779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:58777400-58778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:58777400-58778800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:58777400-58778800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:58777400-58779000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:58777400-58779000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:58777400-58779000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:58777400-58779200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:58777600-58778600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:58777600-58779200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:58777600-58779200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:58777800-58778800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:58778000-58778400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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