Variant report

Variant	rs7905210
Chromosome Location	chr10:93642214-93642215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93638890..93643512-chr10:93665882..93670219,9	MCF-7	breast:
2	chr10:93638107..93642679-chr10:93666717..93670620,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272817	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11186707	0.80[AFR][1000 genomes]
rs11186710	0.85[AFR][1000 genomes]
rs11186729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245639	0.88[AFR][1000 genomes]
rs7084829	0.80[AFR][1000 genomes]
rs7089928	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819110	chr10:93634155-93643195	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93608800-93643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93626200-93643000	Weak transcription	HSMMtube	muscle
3	chr10:93635000-93643200	Weak transcription	Right Atrium	heart
4	chr10:93639400-93643200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93639800-93643000	Weak transcription	Fetal Heart	heart
6	chr10:93639800-93643200	Weak transcription	Esophagus	oesophagus
7	chr10:93639800-93643400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:93640000-93643200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:93640200-93643200	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:93640200-93643200	Weak transcription	Stomach Mucosa	stomach
11	chr10:93640200-93643400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:93640400-93643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:93640400-93643000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:93640400-93643000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:93640400-93643000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:93640400-93643000	Weak transcription	NHDF-Ad	bronchial
17	chr10:93640400-93643200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:93640400-93643200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:93640400-93643200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:93640400-93643400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:93640400-93643400	Weak transcription	Brain Substantia Nigra	brain
22	chr10:93640600-93642800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:93640600-93643000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:93640600-93643000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:93640600-93643000	Weak transcription	Adipose Nuclei	Adipose
26	chr10:93640600-93643000	Weak transcription	Fetal Brain Male	brain
27	chr10:93640600-93643200	Weak transcription	Aorta	Aorta
28	chr10:93640600-93643200	Weak transcription	Brain Germinal Matrix	brain
29	chr10:93640600-93644800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:93640800-93643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:93640800-93643000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:93640800-93643400	Weak transcription	HMEC	breast
33	chr10:93641000-93643000	Weak transcription	NHEK	skin
34	chr10:93641000-93643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:93641200-93643200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:93641400-93642800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:93641400-93642800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:93641400-93643000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:93641400-93643000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:93641600-93642600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:93641600-93643000	Weak transcription	Fetal Brain Female	brain
42	chr10:93641800-93642800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:93641800-93643000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:93642200-93642600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links