Variant report

Variant	rs7905290
Chromosome Location	chr10:45359767-45359768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44806565..44809195-chr10:45358624..45361285,2	MCF-7	breast:
2	chr10:45359136..45362011-chr10:45365608..45368022,2	MCF-7	breast:
3	chr10:45358788..45360533-chr10:45380814..45383521,3	MCF-7	breast:
4	chr10:45359058..45361978-chr10:45470827..45473686,2	K562	blood:
5	chr10:45346108..45348016-chr10:45358744..45360566,2	MCF-7	breast:
6	chr10:45358904..45360461-chr10:45469985..45472068,2	MCF-7	breast:
7	chr10:45359043..45361433-chr10:45402629..45404674,2	MCF-7	breast:
8	chr10:45323438..45325285-chr10:45357392..45360351,2	MCF-7	breast:
9	chr10:44838214..44839988-chr10:45358990..45361761,2	MCF-7	breast:
10	chr10:44889278..44891908-chr10:45358859..45361394,2	MCF-7	breast:
11	chr10:45358806..45362184-chr10:45374031..45377195,7	MCF-7	breast:
12	chr10:45352445..45354314-chr10:45358197..45360590,2	K562	blood:

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73275092	0.80[AMR][1000 genomes]
rs7903359	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870344	chr10:45201522-45366921	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2760155	chr10:45203117-45371777	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1050711	chr10:45203117-45371777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1052977	chr10:45203117-45373945	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044394	chr10:45207779-45361197	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv540577	chr10:45207779-45361197	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv895103	chr10:45208025-45368956	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1037692	chr10:45208025-45371777	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1052669	chr10:45208025-45373945	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv430164	chr10:45210690-45366894	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv466897	chr10:45210690-45366907	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv550707	chr10:45210690-45366907	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv466898	chr10:45210690-45369144	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv550708	chr10:45210690-45369144	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1054383	chr10:45210690-45370067	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1044334	chr10:45210690-45373945	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1041136	chr10:45212354-45361197	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv540579	chr10:45212354-45361197	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv870126	chr10:45218839-45366921	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1038316	chr10:45247684-45371316	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv540585	chr10:45247684-45371316	Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	esv32821	chr10:45247714-45359782	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45357000-45359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:45357000-45359800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr10:45357600-45359800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:45357600-45359800	Bivalent Enhancer	Fetal Stomach	stomach
5	chr10:45357600-45360000	Weak transcription	HSMM	muscle
6	chr10:45358200-45360000	Weak transcription	HSMMtube	muscle
7	chr10:45358800-45359800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr10:45358800-45359800	Bivalent Enhancer	Fetal Kidney	kidney
9	chr10:45358800-45359800	Bivalent Enhancer	Placenta	Placenta
10	chr10:45358800-45360000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:45358800-45360000	Enhancers	Left Ventricle	heart
12	chr10:45359000-45360200	Flanking Active TSS	Fetal Brain Female	brain
13	chr10:45359000-45360400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:45359000-45360600	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr10:45359200-45359800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr10:45359200-45359800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:45359200-45359800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:45359200-45359800	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr10:45359200-45359800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:45359200-45359800	Bivalent Enhancer	Fetal Intestine Small	intestine
21	chr10:45359200-45359800	Enhancers	Spleen	Spleen
22	chr10:45359200-45360000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr10:45359200-45360000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:45359200-45360000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:45359200-45360000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:45359200-45360000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
27	chr10:45359200-45360000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:45359200-45360000	Flanking Active TSS	Fetal Brain Male	brain
29	chr10:45359200-45360200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:45359200-45360200	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr10:45359200-45360200	Flanking Active TSS	Brain Germinal Matrix	brain
32	chr10:45359200-45360400	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr10:45359200-45360800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
34	chr10:45359200-45361000	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr10:45359400-45359800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:45359400-45359800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:45359400-45359800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
38	chr10:45359400-45359800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
39	chr10:45359400-45359800	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:45359400-45359800	Enhancers	Liver	Liver
41	chr10:45359400-45359800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:45359400-45360200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:45359400-45360200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr10:45359400-45360200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
45	chr10:45359400-45360200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:45359400-45360200	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr10:45359400-45360200	Flanking Active TSS	NHDF-Ad	bronchial
48	chr10:45359400-45360400	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr10:45359400-45360400	Flanking Active TSS	Fetal Lung	lung
50	chr10:45359400-45360600	Active TSS	Brain Angular Gyrus	brain

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