Variant report

Variant	rs790637
Chromosome Location	chr1:67699811-67699812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr1:67699765-67700002	HepG2	liver:	n/a	n/a
2	CTCF	chr1:67699780-67699930	HMF	breast:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
3	CTCF	chr1:67699800-67699950	HBMEC	blood vessel:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
4	TBL1XR1	chr1:67699760-67700075	GM12878	blood:	n/a	n/a
5	CTCF	chr1:67699800-67699950	HMEC	breast:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
6	CTCF	chr1:67699780-67699930	GM12864	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
7	CTCF	chr1:67699740-67699890	NB4	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
8	CTCF	chr1:67699800-67699950	AG10803	skin:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
9	MAX	chr1:67699701-67700045	NB4	blood:	n/a	chr1:67699859-67699868 chr1:67699859-67699868 chr1:67699858-67699869 chr1:67699858-67699869 chr1:67699858-67699868 chr1:67699859-67699868 chr1:67699858-67699869 chr1:67699857-67699870 chr1:67699858-67699868
10	CTCF	chr1:67699800-67699950	GM12866	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
11	CTCF	chr1:67699720-67699870	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr1:67699694-67699981	SK-N-SH_RA	brain:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
13	CTCF	chr1:67699763-67699965	LNCaP	prostate:	n/a	chr1:67699860-67699873 chr1:67699859-67699880 chr1:67699857-67699875
14	CTCF	chr1:67699760-67699910	HVMF	connective:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
15	CTCF	chr1:67699740-67699890	NHDF-neo	bronchial:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
16	CTCF	chr1:67699780-67699930	HEK293	kidney:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
17	CTCF	chr1:67699740-67699890	GM12875	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
18	RAD21	chr1:67699566-67700133	HCT-116	colon:	n/a	chr1:67699858-67699877
19	CTCF	chr1:67699760-67699910	AG09319	gingival:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
20	CTCF	chr1:67699740-67699977	K562	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
21	CTCF	chr1:67699780-67699930	HUVEC	blood vessel:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
22	CTCF	chr1:67699700-67699850	BJ	skin:	n/a	n/a
23	CTCF	chr1:67699771-67699941	Lung_OC	lung:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
24	CTCF	chr1:67699712-67700013	HUVEC	blood vessel:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
25	CTCF	chr1:67699680-67699830	RPTEC	kidney:	n/a	n/a
26	CTCF	chr1:67699760-67699910	RPTEC	kidney:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
27	CTCF	chr1:67699736-67699929	A549	lung:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
28	CTCF	chr1:67699760-67699910	HMF	breast:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
29	CTCF	chr1:67699752-67699998	Medullo	brain:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
30	CTCF	chr1:67699740-67699890	MCF-7	breast:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
31	CTCF	chr1:67699767-67699908	GM10248	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
32	CTCF	chr1:67699810-67699906	GM13976	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
33	RAD21	chr1:67699669-67700114	ECC-1	luminal epithelium:	n/a	chr1:67699858-67699877
34	CTCF	chr1:67699800-67699950	WI-38	lung:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
35	RAD21	chr1:67699682-67700012	SK-N-SH_RA	brain:	n/a	chr1:67699858-67699877
36	RAD21	chr1:67699685-67700086	ECC-1	luminal epithelium:	n/a	chr1:67699858-67699877
37	RAD21	chr1:67699489-67700287	SK-N-SH	brain:	n/a	chr1:67699858-67699877
38	CTCF	chr1:67699510-67700206	SK-N-SH	brain:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
39	CTCF	chr1:67699780-67699946	GM10266	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
40	CTCF	chr1:67699740-67699890	Caco-2	colon:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
41	CTCF	chr1:67699800-67699950	HPAF	blood vessel:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
42	CTCF	chr1:67699740-67699890	GM06990	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
43	CTCF	chr1:67699712-67700051	H1-hESC	embryonic stem cell:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
44	CTCF	chr1:67699780-67699930	GM06990	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
45	CTCF	chr1:67699693-67700038	K562	blood:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
46	CTCF	chr1:67699780-67699930	MCF-7	breast:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
47	SMC3	chr1:67699695-67700074	Hela-S3	cervix:	n/a	n/a
48	ZNF143	chr1:67699718-67700004	GM12878	blood:	n/a	n/a
49	CTCF	chr1:67699596-67700157	HCT-116	colon:	n/a	chr1:67699857-67699875 chr1:67699860-67699873 chr1:67699859-67699880
50	CTCF	chr1:67699700-67699850	BE2_C	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:67699386..67700341-chr1:67965846..67966881,3	MCF-7	breast:
2	chr1:67699589..67700260-chr1:67813490..67814049,2	MCF-7	breast:
3	chr1:67699377..67700702-chr1:67965864..67966743,4	K562	blood:
4	chr1:67699326..67699966-chr1:67763695..67764255,2	MCF-7	breast:

Variant related genes	Relation type
C1orf141	TF binding region

rs_ID	r²[population]
rs11209028	1.00[AFR][1000 genomes]
rs6588253	0.82[AFR][1000 genomes]
rs790636	0.95[AFR][1000 genomes]

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67692800-67702000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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