Variant report

Variant	rs7907343
Chromosome Location	chr10:54016099-54016100
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10128309	1.00[ASN][1000 genomes]
rs10508962	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10508963	1.00[ASN][1000 genomes]
rs10508965	1.00[ASN][1000 genomes]
rs11001195	1.00[ASN][1000 genomes]
rs11001263	1.00[ASN][1000 genomes]
rs11001298	1.00[ASN][1000 genomes]
rs11001445	1.00[ASN][1000 genomes]
rs11001452	0.86[MKK][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11001453	1.00[ASN][1000 genomes]
rs11597314	0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs11598203	1.00[ASN][1000 genomes]
rs1194500	1.00[ASN][1000 genomes]
rs1194502	1.00[ASN][1000 genomes]
rs1194509	0.86[AFR][1000 genomes]
rs1194515	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1194516	1.00[ASN][1000 genomes]
rs1201585	1.00[ASN][1000 genomes]
rs12244698	1.00[ASN][1000 genomes]
rs12269357	1.00[ASN][1000 genomes]
rs12269427	1.00[ASN][1000 genomes]
rs16928983	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1910542	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41281544	1.00[ASN][1000 genomes]
rs7070276	1.00[ASN][1000 genomes]
rs7075923	1.00[ASN][1000 genomes]
rs7091481	1.00[ASN][1000 genomes]
rs73346996	1.00[ASN][1000 genomes]
rs73348710	1.00[ASN][1000 genomes]
rs73348739	1.00[ASN][1000 genomes]
rs7909343	1.00[ASN][1000 genomes]
rs7912782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:98 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2621844	chr10:53982660-54033949	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv5974	chr10:53984049-54034016	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3377297	chr10:53984068-54034061	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3359737	chr10:53984078-54034047	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3361575	chr10:53984134-54034048	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3494769	chr10:53984145-54034011	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3494770	chr10:53984145-54034011	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3378490	chr10:53984169-54034027	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3376659	chr10:53984202-54033986	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3072	chr10:53984224-54034020	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3371586	chr10:53984271-54033985	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv1803157	chr10:54002801-54016619	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv1797009	chr10:54011665-54018292	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1799326	chr10:54012431-54018028	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	nsv550877	chr10:54012431-54018028	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	nsv550878	chr10:54012431-54018292	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv1822140	chr10:54012974-54019620	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv3318062	chr10:54013646-54019644	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv550879	chr10:54014065-54018028	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1824769	chr10:54014728-54018241	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3513316	chr10:54015096-54019394	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3513317	chr10:54015096-54019394	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3318073	chr10:54015268-54018667	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3318085	chr10:54015268-54018667	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3378276	chr10:54015601-54018175	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv10250	chr10:54015661-54018328	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv825380	chr10:54015708-54018007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv825381	chr10:54015708-54018227	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv825382	chr10:54015708-54018466	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv819404	chr10:54015737-54018257	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv550880	chr10:54016062-54016619	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
35	nsv550881	chr10:54016062-54017041	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv550882	chr10:54016062-54017151	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv550883	chr10:54016062-54017269	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv550884	chr10:54016062-54017651	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1794429	chr10:54016062-54018028	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv1796796	chr10:54016062-54018028	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv1797897	chr10:54016062-54018028	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv1799991	chr10:54016062-54018028	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv1801232	chr10:54016062-54018028	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv1801409	chr10:54016062-54018028	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
45	esv1802468	chr10:54016062-54018028	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv1802803	chr10:54016062-54018028	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv1803784	chr10:54016062-54018028	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv1803851	chr10:54016062-54018028	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv1807235	chr10:54016062-54018028	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
50	esv1808655	chr10:54016062-54018028	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54002000-54042000	Weak transcription	Aorta	Aorta
2	chr10:54008800-54016600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:54010000-54023200	Weak transcription	Psoas Muscle	Psoas
4	chr10:54011000-54016600	Weak transcription	HSMM	muscle
5	chr10:54012800-54019000	Weak transcription	Right Atrium	heart
6	chr10:54014200-54016800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:54014800-54016400	Weak transcription	HSMMtube	muscle
8	chr10:54015000-54016600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:54015200-54018600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:54016000-54017400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:54016000-54019600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:54016000-54019600	Enhancers	Skeletal Muscle Male	skeletal muscle

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