Variant report

Variant	rs7907829
Chromosome Location	chr10:6107007-6107008
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10905713	0.85[EUR][1000 genomes]
rs10905718	0.84[EUR][1000 genomes]
rs10905719	0.85[EUR][1000 genomes]
rs12412095	0.85[EUR][1000 genomes]
rs3134882	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147359	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
2	chr10:6102200-6107400	Weak transcription	Right Atrium	heart
3	chr10:6102200-6107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:6104200-6107200	Weak transcription	Left Ventricle	heart
5	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:6104400-6107400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:6104400-6107600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:6104600-6107400	Weak transcription	Spleen	Spleen
9	chr10:6104600-6111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:6104800-6107200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:6104800-6107400	Weak transcription	Lung	lung
13	chr10:6104800-6110200	Weak transcription	GM12878-XiMat	blood
14	chr10:6105000-6107200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:6105000-6107200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:6105000-6108000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:6105000-6108200	Weak transcription	Primary B cells from cord blood	blood
18	chr10:6105000-6109200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:6105200-6107200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:6105200-6107200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:6105200-6107200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:6105200-6107200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:6105200-6107200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:6105200-6107400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:6105200-6107600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:6105200-6108000	Weak transcription	Primary T cells from cord blood	blood
27	chr10:6105200-6108000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:6105400-6107200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:6105600-6108000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:6106000-6107200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:6106200-6108400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr10:6106400-6110000	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:6106800-6114800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:6107000-6110800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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