Variant report

Variant	rs79093481
Chromosome Location	chr11:16302142-16302143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16253830..16255900-chr11:16301377..16303054,2	K562	blood:
2	chr11:16292606..16296428-chr11:16299635..16303061,5	K562	blood:
3	chr11:16289702..16293016-chr11:16300436..16303911,5	K562	blood:
4	chr11:16300243..16302575-chr11:16402868..16404616,2	K562	blood:
5	chr11:16300623..16303536-chr11:16310934..16312660,2	K562	blood:
6	chr11:16301382..16303241-chr11:16318945..16321849,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3335445	chr11:16301976-16306474	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16286800-16314800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16298600-16302800	Weak transcription	Pancreas	Pancrea
3	chr11:16300200-16313400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:16300800-16314200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16301200-16302200	Active TSS	K562	blood
6	chr11:16301400-16302200	Enhancers	Primary T cells from cord blood	blood
7	chr11:16301600-16302200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:16301600-16302200	Active TSS	Right Atrium	heart
9	chr11:16301600-16302400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:16301600-16302400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:16301600-16302400	Flanking Active TSS	NHEK	skin
12	chr11:16301600-16302400	Active TSS	Osteobl	bone
13	chr11:16301800-16302200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:16301800-16302400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:16301800-16302400	Enhancers	Fetal Intestine Large	intestine
16	chr11:16301800-16302600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:16302000-16302200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16302000-16302200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16302000-16302200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr11:16302000-16302200	Enhancers	Fetal Intestine Small	intestine
21	chr11:16302000-16302200	Enhancers	Fetal Muscle Leg	muscle
22	chr11:16302000-16302200	Enhancers	Left Ventricle	heart
23	chr11:16302000-16302400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:16302000-16302400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:16302000-16302400	Enhancers	Fetal Lung	lung
26	chr11:16302000-16302400	Flanking Active TSS	HUVEC	blood vessel
27	chr11:16302000-16302800	Enhancers	Fetal Heart	heart

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