Variant report

Variant	rs7909551
Chromosome Location	chr10:207829-207830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2436027	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2448370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2448378	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs2496276	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap]
rs7081674	0.81[AFR][1000 genomes]
rs72770975	1.00[ASN][1000 genomes]
rs9419497	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:189000-208800	Weak transcription	Small Intestine	intestine
2	chr10:190400-215200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:190600-212800	Weak transcription	Left Ventricle	heart
4	chr10:194000-211400	Weak transcription	Fetal Lung	lung
5	chr10:194200-228200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:194600-210400	Weak transcription	Primary T cells from cord blood	blood
7	chr10:194800-212600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:196800-215000	Weak transcription	Fetal Intestine Large	intestine
9	chr10:197000-209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:197400-209200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:197400-210400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:197400-211200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:197800-219800	Weak transcription	HUVEC	blood vessel
14	chr10:199600-209800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:200000-228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:200400-208800	Weak transcription	Psoas Muscle	Psoas
17	chr10:200400-209200	Weak transcription	Adipose Nuclei	Adipose
18	chr10:200400-226800	Weak transcription	HSMM	muscle
19	chr10:200400-230400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:201000-214600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:204000-212000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:206200-210200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:206600-209600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:206600-209800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:206800-208000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:207200-208000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:207200-208000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:207200-226800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:207400-208200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:207600-208400	Enhancers	Ovary	ovary
31	chr10:207600-209800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:207800-208000	Enhancers	Aorta	Aorta
33	chr10:207800-209800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links