Variant report

Variant	rs7909628
Chromosome Location	chr10:23708636-23708637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12247204	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12249001	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4281395	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748883	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748884	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6482273	0.82[ASN][1000 genomes]
rs9988767	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7909628	DNAJC1	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23701600-23709600	Weak transcription	Hela-S3	cervix
2	chr10:23704400-23709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:23706400-23708800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:23706400-23708800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:23706600-23708800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23706800-23709000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23707000-23711200	Weak transcription	Placenta	Placenta
8	chr10:23707400-23709800	Enhancers	Fetal Lung	lung
9	chr10:23707800-23708800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:23707800-23708800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:23707800-23709200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:23708600-23709600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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