Variant report

Variant	rs7910316
Chromosome Location	chr10:55956822-55956823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55527193-55535408..10:55949104-55956834	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1020197	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1020203	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1020204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1020206	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10740578	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10763081	1.00[JPT][hapmap]
rs10763082	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763088	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs10825265	1.00[JPT][hapmap]
rs1470167	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1962905	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2018332	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384413	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384416	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384418	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384419	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384420	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384421	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2891506	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4082040	0.82[CEU][hapmap]
rs4082042	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4420174	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4494232	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935507	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935509	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6481065	1.00[JPT][hapmap]
rs6481067	0.83[CEU][hapmap]
rs7090306	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092751	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7093533	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7474638	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs7477283	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7914881	1.00[JPT][hapmap]
rs7919293	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7919565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs972985	0.82[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895432	chr10:55922706-55959660	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv467215	chr10:55943184-56019194	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv550951	chr10:55943184-56019194	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv895433	chr10:55951173-55990907	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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