Variant report

Variant	rs7910353
Chromosome Location	chr10:49719217-49719218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49714827..49719872-chr10:49861427..49864767,4	K562	blood:
2	chr10:49718293..49721279-chr10:50504590..50507564,3	K562	blood:
3	chr10:49676784..49678693-chr10:49717036..49719541,2	K562	blood:
4	chr10:49714562..49719396-chr10:49719920..49724610,6	K562	blood:
5	chr10:49516511..49518164-chr10:49717889..49719391,2	K562	blood:
6	chr10:49516068..49518164-chr10:49716922..49719391,2	K562	blood:
7	chr10:49714746..49717330-chr10:49717821..49719600,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FRMPD2-1	chr10:49717904-49719721	NONHSAT013273

No data

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000107643	Chromatin interaction
ENSG00000177354	Chromatin interaction
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10857587	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857588	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857589	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101354	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101355	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101357	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11596336	0.85[ASN][1000 genomes]
rs12777174	0.85[ASN][1000 genomes]
rs12777190	0.85[ASN][1000 genomes]
rs12779617	0.83[ASN][1000 genomes]
rs1816888	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1900022	0.85[ASN][1000 genomes]
rs34279198	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34552122	0.85[ASN][1000 genomes]
rs34774310	0.85[ASN][1000 genomes]
rs3910907	0.85[ASN][1000 genomes]
rs4838605	0.81[ASN][1000 genomes]
rs7911247	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7915127	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915233	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv550814	chr10:49705142-49735563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv516006	chr10:49707942-49723300	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
2	chr10:49706000-49723400	Weak transcription	NH-A	brain
3	chr10:49709200-49720600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:49714000-49727200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:49715800-49727800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:49716800-49721400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:49717000-49719800	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr10:49717200-49719800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:49717200-49719800	Weak transcription	Brain Anterior Caudate	brain
10	chr10:49717200-49721400	Weak transcription	HSMM	muscle
11	chr10:49717400-49719400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:49717400-49719400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:49717400-49719400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:49717400-49719800	Weak transcription	K562	blood
15	chr10:49717400-49721000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:49717400-49721200	Weak transcription	HMEC	breast
17	chr10:49717400-49726200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:49717600-49719600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:49717800-49720400	Weak transcription	HSMMtube	muscle
20	chr10:49718000-49719800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:49718000-49720000	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:49718200-49719400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:49718200-49720000	Weak transcription	Fetal Thymus	thymus
24	chr10:49718200-49723600	Weak transcription	HUVEC	blood vessel
25	chr10:49718400-49719400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:49718400-49720800	Strong transcription	Osteobl	bone
27	chr10:49718600-49719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:49718600-49719800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:49719000-49719600	Enhancers	NHDF-Ad	bronchial
30	chr10:49719000-49720400	Enhancers	Brain Substantia Nigra	brain
31	chr10:49719200-49719400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:49719200-49719400	Weak transcription	Fetal Stomach	stomach
33	chr10:49719200-49719400	ZNF genes & repeats	Pancreas	Pancrea
34	chr10:49719200-49720000	Enhancers	Spleen	Spleen
35	chr10:49719200-49720200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:49719200-49720600	Enhancers	Primary hematopoietic stem cells	blood
37	chr10:49719200-49720600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:49719200-49721200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:49719200-49721200	Weak transcription	NHLF	lung
40	chr10:49719200-49721400	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links