Variant report

Variant	rs79127231
Chromosome Location	chr1:75839855-75839856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1455	chr1:75812377-75864182	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv508304	chr1:75838772-75857426	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75831200-75841000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:75831400-75841400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:75833400-75841000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:75833600-75841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:75836800-75841200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:75837400-75840200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:75837800-75841600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:75838200-75840600	Weak transcription	NHEK	skin
9	chr1:75838200-75841800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:75838400-75840400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:75839000-75840400	Enhancers	Placenta	Placenta
12	chr1:75839200-75840200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:75839200-75840400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:75839200-75840400	Flanking Active TSS	HepG2	liver
15	chr1:75839400-75840600	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:75839800-75840000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr1:75839800-75840000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:75839800-75840200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr1:75839800-75840600	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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