Variant report

Variant	rs79156199
Chromosome Location	chr3:112471355-112471356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:112470298-112471455	ECC-1	luminal epithelium:	n/a	n/a
2	SP1	chr3:112470835-112471399	A549	lung:	n/a	n/a
3	EP300	chr3:112470236-112471414	ECC-1	luminal epithelium:	n/a	chr3:112470312-112470326 chr3:112470310-112470324
4	ESR1	chr3:112470876-112471368	ECC-1	luminal epithelium:	n/a	n/a
5	JUND	chr3:112470862-112471417	A549	lung:	n/a	n/a
6	TCF12	chr3:112470248-112471506	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr3:112470572-112471530	A549	lung:	n/a	n/a
8	NFIC	chr3:112470918-112471391	ECC-1	luminal epithelium:	n/a	n/a
9	KAP1	chr3:112470385-112471475	HEK293	kidney:	n/a	n/a
10	NFIC	chr3:112470880-112471374	ECC-1	luminal epithelium:	n/a	n/a
11	ZNF143	chr3:112471236-112471412	H1-hESC	embryonic stem cell:	n/a	n/a
12	EP300	chr3:112470844-112471470	A549	lung:	n/a	n/a
13	ESR1	chr3:112470965-112471400	ECC-1	luminal epithelium:	n/a	n/a
14	ESR1	chr3:112470929-112471368	ECC-1	luminal epithelium:	n/a	n/a
15	SP1	chr3:112470711-112471406	A549	lung:	n/a	n/a
16	FOSL2	chr3:112470403-112471416	A549	lung:	n/a	n/a
17	TCF12	chr3:112470909-112471505	ECC-1	luminal epithelium:	n/a	n/a
18	FOXA2	chr3:112470735-112471383	A549	lung:	n/a	n/a
19	FOXA2	chr3:112470860-112471495	A549	lung:	n/a	n/a
20	TCF12	chr3:112470249-112471541	A549	lung:	n/a	n/a
21	ESR1	chr3:112470872-112471373	ECC-1	luminal epithelium:	n/a	n/a
22	TEAD4	chr3:112470940-112471416	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112461762..112464702-chr3:112469113..112471587,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000240893	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1678022	chr3:112471355-112471356	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112468000-112472000	Enhancers	A549	lung
2	chr3:112468000-112478200	Weak transcription	K562	blood
3	chr3:112468000-112488200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:112468200-112471600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:112469000-112472000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:112469200-112471800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:112470000-112472600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:112470400-112471400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:112470600-112471400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:112470600-112472800	Enhancers	Stomach Mucosa	stomach
11	chr3:112470800-112471400	Enhancers	Fetal Kidney	kidney
12	chr3:112470800-112471800	Enhancers	Duodenum Mucosa	Duodenum
13	chr3:112470800-112472000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:112470800-112472200	Enhancers	Esophagus	oesophagus
15	chr3:112471200-112479400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:112471200-112479600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links