Variant report

Variant	rs7918822
Chromosome Location	chr10:93225945-93225946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93225738..93228556-chr10:93240715..93243653,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17093783	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17106676	0.95[AFR][1000 genomes]
rs17106721	0.95[AFR][1000 genomes]
rs17106724	0.95[AFR][1000 genomes]
rs7076967	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7091305	0.95[AFR][1000 genomes]
rs7923473	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv948134	chr10:93224011-93239053	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
4	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
7	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:93220600-93226600	Weak transcription	NHLF	lung
10	chr10:93220600-93226800	Weak transcription	A549	lung
11	chr10:93220600-93271400	Weak transcription	HMEC	breast
12	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
15	chr10:93221000-93226600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
17	chr10:93221800-93226600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:93222200-93226000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:93222200-93228000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:93222400-93226400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:93222400-93228200	Strong transcription	Fetal Brain Male	brain
22	chr10:93222400-93230400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:93222600-93226800	Weak transcription	Gastric	stomach
24	chr10:93222600-93226800	Weak transcription	Thymus	Thymus
25	chr10:93222600-93228000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:93222600-93254400	Weak transcription	NHDF-Ad	bronchial
27	chr10:93222800-93227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:93222800-93244600	Weak transcription	Osteobl	bone
29	chr10:93223000-93226600	Weak transcription	Right Ventricle	heart
30	chr10:93223000-93226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:93223000-93227000	Weak transcription	Spleen	Spleen
32	chr10:93223000-93227200	ZNF genes & repeats	Fetal Lung	lung
33	chr10:93223200-93230400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:93223400-93226800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:93223400-93228400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:93223600-93226600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:93223600-93228400	Weak transcription	Stomach Mucosa	stomach
38	chr10:93223800-93227000	Weak transcription	Hela-S3	cervix
39	chr10:93224000-93226600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:93224200-93226200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:93224200-93227000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:93224200-93228200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:93224200-93271200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:93224400-93226600	Weak transcription	Brain Angular Gyrus	brain
46	chr10:93224400-93228600	Weak transcription	Liver	Liver
47	chr10:93224600-93226200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:93224600-93226200	Weak transcription	Placenta	Placenta
49	chr10:93224600-93226400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:93224600-93226600	Weak transcription	Adipose Nuclei	Adipose

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