Variant report

Variant	rs7920023
Chromosome Location	chr10:54647760-54647761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10762897	0.83[EUR][1000 genomes]
rs10762898	0.82[ASN][1000 genomes]
rs10824825	0.83[EUR][1000 genomes]
rs10824826	0.83[EUR][1000 genomes]
rs10824827	0.84[EUR][1000 genomes]
rs10824828	0.94[ASN][1000 genomes]
rs10824829	0.82[ASN][1000 genomes]
rs11003226	0.83[EUR][1000 genomes]
rs11003231	0.83[EUR][1000 genomes]
rs11003233	0.83[EUR][1000 genomes]
rs11003237	0.84[EUR][1000 genomes]
rs11003238	0.84[EUR][1000 genomes]
rs11003239	0.84[EUR][1000 genomes]
rs11003241	0.82[ASN][1000 genomes]
rs11003242	0.82[ASN][1000 genomes]
rs11003243	0.83[ASN][1000 genomes]
rs11003245	0.82[ASN][1000 genomes]
rs11003246	0.92[ASN][1000 genomes]
rs11003248	0.90[ASN][1000 genomes]
rs11814215	0.82[ASN][1000 genomes]
rs1343043	0.84[EUR][1000 genomes]
rs1935933	0.83[ASN][1000 genomes]
rs35027420	0.83[EUR][1000 genomes]
rs35256266	0.80[ASN][1000 genomes]
rs4147265	0.84[EUR][1000 genomes]
rs7912660	0.84[EUR][1000 genomes]
rs7912678	0.84[EUR][1000 genomes]
rs7918475	0.91[ASN][1000 genomes]
rs9787622	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv831876	chr10:54492511-54649392	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv467200	chr10:54585401-54726056	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv550905	chr10:54585401-54726056	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1041940	chr10:54621342-54737528	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv24485	chr10:54644725-54648808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54641000-54653600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:54644600-54651600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:54645200-54649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:54647000-54648000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:54647200-54647800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:54647200-54647800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:54647200-54648000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:54647200-54648000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:54647200-54648000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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