Variant report

Variant	rs79206884
Chromosome Location	chr4:53930605-53930606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2762432	chr4:53929894-53942489	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1585792	chr4:53930604-53930605	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2426226	chr4:53930605-53930605	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv282564	chr4:53930605-53930605	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2411518	chr4:53930605-53930606	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53921600-53933200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:53922000-53933600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:53922200-53945600	Weak transcription	Ovary	ovary
4	chr4:53922200-53954600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:53922600-53931400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:53922600-53933400	Weak transcription	Osteobl	bone
7	chr4:53924200-53932000	Weak transcription	HepG2	liver
8	chr4:53929200-53933600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:53930200-53933200	Weak transcription	Primary T cells from cord blood	blood
10	chr4:53930400-53930800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr4:53930400-53932000	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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