Variant report

Variant	rs7920996
Chromosome Location	chr10:22267343-22267344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22265820..22270074-chr10:22272130..22276008,4	K562	blood:
2	chr10:22253374..22255077-chr10:22266745..22269672,2	MCF-7	breast:
3	chr10:22258903..22261616-chr10:22266301..22269258,3	K562	blood:
4	chr10:22266744..22270763-chr10:22608358..22611038,3	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16922013	1.00[AMR][1000 genomes]
rs7084838	1.00[AMR][1000 genomes]
rs7096406	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs7916788	1.00[ASW][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs9665635	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22256800-22269000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:22257000-22270600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:22260600-22273800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:22261800-22269200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:22262000-22270000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:22262000-22274800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:22262600-22267400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:22264400-22269400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:22264600-22286000	Weak transcription	Gastric	stomach
10	chr10:22264800-22267600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:22265000-22267400	Weak transcription	NHDF-Ad	bronchial
12	chr10:22265200-22269000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:22266000-22267400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:22266000-22267600	Enhancers	Brain Angular Gyrus	brain
15	chr10:22266000-22267800	Enhancers	Brain Anterior Caudate	brain
16	chr10:22266000-22268400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:22266000-22268400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:22266000-22270000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:22266000-22278400	Weak transcription	Pancreas	Pancrea
20	chr10:22266000-22282200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:22266200-22267600	Enhancers	Brain Hippocampus Middle	brain
22	chr10:22266200-22268000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:22266200-22269600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22266200-22270800	Weak transcription	Small Intestine	intestine
25	chr10:22266400-22267600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:22266400-22267600	Enhancers	Brain Substantia Nigra	brain
27	chr10:22266400-22267800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:22266600-22267400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:22266600-22268400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:22266600-22270000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:22266800-22268200	Enhancers	HUVEC	blood vessel
32	chr10:22266800-22270000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr10:22267000-22267600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr10:22267000-22267600	Enhancers	HMEC	breast
35	chr10:22267000-22267800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:22267200-22267400	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:22267200-22267600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:22267200-22267600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr10:22267200-22267600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:22267200-22267600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr10:22267200-22267600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr10:22267200-22267600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:22267200-22267600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr10:22267200-22267600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:22267200-22267600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:22267200-22267600	Enhancers	Adipose Nuclei	Adipose
47	chr10:22267200-22267600	Enhancers	HSMM	muscle
48	chr10:22267200-22267600	Enhancers	NH-A	brain
49	chr10:22267200-22267600	Enhancers	NHLF	lung
50	chr10:22267200-22267600	Enhancers	Osteobl	bone

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