Variant report

Variant	rs7921902
Chromosome Location	chr10:55841776-55841777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10763064	0.91[JPT][hapmap]
rs10825211	0.91[JPT][hapmap]
rs10825220	0.81[ASN][1000 genomes]
rs10825221	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10825223	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10825224	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10825225	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10825226	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10825227	0.81[ASN][1000 genomes]
rs11004025	0.91[JPT][hapmap]
rs1911381	0.91[JPT][hapmap]
rs1911382	0.91[JPT][hapmap]
rs1911383	0.91[JPT][hapmap]
rs1911384	0.91[JPT][hapmap]
rs2135716	0.91[JPT][hapmap]
rs2384371	0.82[JPT][hapmap]
rs4418714	0.91[JPT][hapmap]
rs4418715	0.91[JPT][hapmap]
rs4465289	0.82[JPT][hapmap]
rs4615929	0.91[JPT][hapmap]
rs4935495	0.91[JPT][hapmap]
rs7076822	0.90[JPT][hapmap]
rs7921240	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7922884	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7921902	MSMB	cis	parietal	SCAN
rs7921902	A1CF	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55841400-55842400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:55841400-55847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:55841600-55842000	Enhancers	NH-A	brain
4	chr10:55841600-55842400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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