Variant report

Variant	rs79235129
Chromosome Location	chr14:31920170-31920171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31914833..31916596-chr14:31919367..31920967,2	MCF-7	breast:
2	chr14:31915577..31920525-chr14:31924298..31927871,6	MCF-7	breast:
3	chr14:31918485..31921453-chr14:31921609..31924237,3	MCF-7	breast:
4	chr14:31881996..31884911-chr14:31918681..31921369,2	MCF-7	breast:
5	chr14:31917093..31923585-chr14:31924368..31929094,11	MCF-7	breast:
6	chr14:31888318..31891005-chr14:31919529..31921805,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203546	Chromatin interaction
ENSG00000129493	Chromatin interaction
ENSG00000129480	Chromatin interaction
ENSG00000250365	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv456198	chr14:31919728-31972289	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv564179	chr14:31919728-31972289	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31890400-31921200	Weak transcription	Psoas Muscle	Psoas
2	chr14:31890400-31925800	Weak transcription	Right Ventricle	heart
3	chr14:31890600-31920600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:31890600-31922400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:31890800-31920800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:31890800-31925200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:31900400-31920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:31901200-31921200	Weak transcription	Brain Substantia Nigra	brain
9	chr14:31901200-31922400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:31901800-31920400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:31904600-31920600	Weak transcription	Left Ventricle	heart
12	chr14:31904600-31925200	Weak transcription	Fetal Brain Male	brain
13	chr14:31905000-31920600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:31905200-31925800	Weak transcription	NHDF-Ad	bronchial
15	chr14:31907000-31925200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:31909800-31920800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:31910600-31924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:31911000-31920800	Weak transcription	Ovary	ovary
19	chr14:31911000-31925200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:31911000-31925200	Weak transcription	K562	blood
21	chr14:31911200-31920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:31911200-31925800	Weak transcription	Fetal Intestine Small	intestine
23	chr14:31911400-31921000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:31911400-31921000	Weak transcription	HMEC	breast
25	chr14:31911600-31921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:31911600-31925200	Weak transcription	Placenta	Placenta
27	chr14:31911600-31926000	Weak transcription	Lung	lung
28	chr14:31911800-31921000	Weak transcription	Fetal Kidney	kidney
29	chr14:31912000-31920600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr14:31912000-31925800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr14:31912200-31920600	Weak transcription	NH-A	brain
32	chr14:31912200-31921000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:31912200-31925200	Weak transcription	HSMMtube	muscle
34	chr14:31912200-31925200	Weak transcription	NHLF	lung
35	chr14:31913000-31921200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:31913200-31920800	Weak transcription	Brain Germinal Matrix	brain
37	chr14:31913600-31925200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:31913800-31923600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:31914000-31926000	Weak transcription	Small Intestine	intestine
40	chr14:31914400-31920600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr14:31914800-31922600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:31914800-31922600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:31914800-31925200	Weak transcription	Fetal Stomach	stomach
44	chr14:31915200-31921200	Weak transcription	Fetal Intestine Large	intestine
45	chr14:31915200-31921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr14:31915200-31925200	Weak transcription	Primary T cells from cord blood	blood
47	chr14:31915400-31922600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:31915400-31922600	Strong transcription	HepG2	liver
49	chr14:31915600-31922000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:31915800-31924000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links