Variant report

Variant	rs7924182
Chromosome Location	chr10:1179519-1179520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1174243..1176859-chr10:1177854..1179866,2	K562	blood:
2	chr10:1178467..1181208-chr10:1183126..1185435,2	K562	blood:
3	chr10:1174018..1175743-chr10:1178173..1179866,2	K562	blood:
4	chr10:1178337..1181233-chr10:1242217..1245048,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10794727	0.91[JPT][hapmap]
rs10903374	0.93[ASN][1000 genomes]
rs10903375	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10903376	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10903387	0.86[JPT][hapmap]
rs10903388	0.86[JPT][hapmap]
rs10903392	0.86[JPT][hapmap]
rs10903395	0.82[JPT][hapmap]
rs11250281	0.98[ASN][1000 genomes]
rs11250312	0.85[JPT][hapmap]
rs12359210	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1912333	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1912334	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2136601	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34859787	0.86[ASN][1000 genomes]
rs4256905	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4880779	0.86[JPT][hapmap]
rs6560712	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7095843	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv894726	chr10:1151620-1216861	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
19	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv466699	chr10:1166400-1351088	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
21	nsv549768	chr10:1166400-1351088	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
22	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
23	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv894727	chr10:1168267-1224336	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
25	nsv1045618	chr10:1179519-1537451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7924182	C10orf110	cis	cerebellum	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1144800-1232600	Weak transcription	Right Atrium	heart
2	chr10:1170000-1180400	Strong transcription	Aorta	Aorta
3	chr10:1176600-1183600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:1176800-1179800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:1176800-1180000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:1176800-1187000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:1177000-1179600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:1177000-1179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:1177000-1181200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:1177200-1180000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:1177200-1180600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:1177200-1182800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:1177400-1179600	Weak transcription	Brain Germinal Matrix	brain
14	chr10:1177400-1180600	Weak transcription	A549	lung
15	chr10:1177600-1179600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:1177600-1179600	Weak transcription	Small Intestine	intestine
17	chr10:1177600-1179800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:1177600-1179800	Weak transcription	Fetal Thymus	thymus
19	chr10:1177600-1179800	Weak transcription	Pancreas	Pancrea
20	chr10:1177600-1179800	Weak transcription	GM12878-XiMat	blood
21	chr10:1177600-1180200	Weak transcription	Right Ventricle	heart
22	chr10:1177600-1180200	Weak transcription	Thymus	Thymus
23	chr10:1177600-1180400	Weak transcription	Colonic Mucosa	Colon
24	chr10:1177600-1180600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:1177600-1180800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:1177600-1181000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:1177600-1181000	Weak transcription	Brain Substantia Nigra	brain
28	chr10:1177600-1181000	Weak transcription	HepG2	liver
29	chr10:1177600-1181800	Weak transcription	HUVEC	blood vessel
30	chr10:1177600-1182600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:1177600-1188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:1177800-1179600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:1177800-1179600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr10:1177800-1179600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:1177800-1179600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:1177800-1179600	Weak transcription	NHEK	skin
37	chr10:1177800-1179800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:1177800-1179800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:1177800-1179800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:1177800-1179800	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:1177800-1179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:1177800-1179800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:1177800-1179800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:1177800-1179800	Weak transcription	Osteobl	bone
45	chr10:1177800-1180000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:1177800-1180000	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:1177800-1180200	Weak transcription	Ovary	ovary
48	chr10:1177800-1180400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:1177800-1181000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:1177800-1181000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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