Variant report

Variant	rs7924452
Chromosome Location	chr11:18785239-18785240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18784737..18787266-chr11:18788580..18790912,2	MCF-7	breast:
2	chr11:18778455..18780307-chr11:18783518..18786208,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs872872	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18774000-18790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:18774600-18790400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:18774800-18786600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:18774800-18790400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:18780800-18790600	Weak transcription	Left Ventricle	heart
6	chr11:18783000-18801800	Weak transcription	Spleen	Spleen
7	chr11:18783800-18791200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
9	chr11:18784200-18785400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:18784400-18786000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:18784600-18786200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:18784800-18786000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:18784800-18786000	Enhancers	Brain Anterior Caudate	brain
14	chr11:18784800-18786200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:18784800-18786200	Enhancers	HMEC	breast
16	chr11:18785000-18785600	Enhancers	NHDF-Ad	bronchial
17	chr11:18785000-18785600	Enhancers	NHLF	lung
18	chr11:18785000-18786200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:18785000-18786200	Enhancers	Hela-S3	cervix
20	chr11:18785000-18786400	Enhancers	HUVEC	blood vessel
21	chr11:18785000-18786400	Enhancers	NHEK	skin
22	chr11:18785000-18791800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:18785200-18786000	Enhancers	HSMM	muscle
24	chr11:18785200-18786000	Enhancers	Osteobl	bone
25	chr11:18785200-18786200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:18785200-18786200	Flanking Active TSS	A549	lung
27	chr11:18785200-18786400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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