Variant report

Variant	rs79248123
Chromosome Location	chr9:8640829-8640830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3354209	chr9:8639052-8643250	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3517110	chr9:8640002-8642700	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3481882	chr9:8640744-8641760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3517115	chr9:8640748-8641769	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3517113	chr9:8640754-8641746	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3517111	chr9:8640765-8641696	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3481884	chr9:8640773-8641736	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3481883	chr9:8640775-8641734	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3481881	chr9:8640785-8641687	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3517112	chr9:8640792-8641715	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3517109	chr9:8640796-8641709	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv824844	chr9:8640797-8641531	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv824845	chr9:8640797-8641689	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8616800-8648000	Weak transcription	Fetal Kidney	kidney
2	chr9:8622000-8648600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:8623400-8647800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:8628400-8643600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:8628800-8644000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:8628800-8644200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:8629800-8651600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:8630200-8652400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:8631000-8649800	Weak transcription	Ovary	ovary
10	chr9:8633200-8644200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8634000-8641000	Weak transcription	Fetal Lung	lung
12	chr9:8634200-8643800	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8634600-8648000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:8636600-8643400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:8638000-8648000	Weak transcription	Fetal Brain Male	brain
16	chr9:8640800-8641800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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