Variant report

Variant	rs7924872
Chromosome Location	chr11:100623064-100623065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6590822	0.83[AMR][1000 genomes]
rs7127483	1.00[AMR][1000 genomes]
rs7930550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947892	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100612400-100630800	Weak transcription	Right Atrium	heart
2	chr11:100613000-100631600	Weak transcription	Ovary	ovary
3	chr11:100613200-100628400	Weak transcription	Fetal Kidney	kidney
4	chr11:100614200-100623800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:100617200-100623200	Weak transcription	Right Ventricle	heart
6	chr11:100619200-100623800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:100620800-100623200	Weak transcription	Gastric	stomach
8	chr11:100620800-100623400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:100620800-100623400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:100620800-100623800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:100620800-100626800	Weak transcription	Liver	Liver
12	chr11:100620800-100628400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:100621000-100623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:100621000-100623400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:100621000-100642400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:100621200-100623200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:100621200-100623600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:100621400-100623200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:100621400-100623400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:100621400-100624400	Weak transcription	Fetal Lung	lung
21	chr11:100621400-100631600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:100621600-100623200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:100621600-100623600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:100622200-100623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:100622200-100624000	Weak transcription	Fetal Stomach	stomach
26	chr11:100622200-100625800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:100622400-100623200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:100622400-100623600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:100622800-100623200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:100622800-100623400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:100622800-100623400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr11:100622800-100624000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:100622800-100624600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:100622800-100624600	Enhancers	Placenta	Placenta
35	chr11:100622800-100624800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr11:100622800-100624800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr11:100622800-100624800	Enhancers	HMEC	breast
38	chr11:100622800-100624800	Enhancers	NHEK	skin
39	chr11:100622800-100625200	Enhancers	Fetal Heart	heart
40	chr11:100623000-100623400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:100623000-100624200	Enhancers	Spleen	Spleen
42	chr11:100623000-100624400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:100623000-100624600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:100623000-100624600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:100623000-100624600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:100623000-100624800	Enhancers	Stomach Mucosa	stomach
47	chr11:100623000-100625000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr11:100623000-100625200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:100623000-100625200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr11:100623000-100625200	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links