Variant report

Variant	rs7924928
Chromosome Location	chr11:46714719-46714720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46708484..46715351-chr11:46720742..46723956,9	MCF-7	breast:
2	chr11:46714021..46715722-chr11:46716371..46718644,2	MCF-7	breast:
3	chr11:46711960..46714967-chr11:46715213..46717397,3	K562	blood:

Variant related genes	Relation type
ENSG00000175213	Chromatin interaction
ENSG00000175220	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7113453	0.88[AFR][1000 genomes]
rs7124331	0.98[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46667200-46717000	Strong transcription	Brain Germinal Matrix	brain
2	chr11:46697200-46716000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:46697200-46721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:46698000-46718600	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr11:46698400-46719400	Strong transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:46699200-46715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:46699200-46716400	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:46699200-46717000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:46699200-46717200	Strong transcription	Liver	Liver
10	chr11:46699200-46719000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:46699800-46715200	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:46700400-46718800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:46700600-46715400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr11:46701800-46715400	Weak transcription	K562	blood
15	chr11:46701800-46718600	Strong transcription	Fetal Intestine Large	intestine
16	chr11:46702000-46715800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:46702600-46721400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:46702800-46716000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:46702800-46716600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:46702800-46718400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:46703000-46715000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:46703000-46715200	Weak transcription	Hela-S3	cervix
23	chr11:46703000-46721400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:46703400-46716400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:46704400-46716800	Weak transcription	Small Intestine	intestine
26	chr11:46706600-46718000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:46707000-46719000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:46707200-46716000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:46707200-46716600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:46707200-46719000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:46707400-46716400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:46707400-46718400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:46707600-46716600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:46707600-46718600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:46707600-46719000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:46707800-46719800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:46708200-46717600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:46708400-46718200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:46708800-46718800	Strong transcription	Lung	lung
40	chr11:46709000-46717400	Weak transcription	Psoas Muscle	Psoas
41	chr11:46709200-46715400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:46709600-46715000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:46709600-46715200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:46709800-46715200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr11:46709800-46715200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:46709800-46715400	Strong transcription	Adipose Nuclei	Adipose
47	chr11:46709800-46715400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:46709800-46715600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:46709800-46715800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:46709800-46716000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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