Variant report

Variant	rs7925083
Chromosome Location	chr11:86398081-86398082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11819827	0.81[EUR][1000 genomes]
rs11822971	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11823255	0.88[EUR][1000 genomes]
rs11826933	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56029838	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56114029	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs666646	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129626	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7924649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3360406	chr11:86396204-86398252	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86384800-86400400	Weak transcription	Gastric	stomach
2	chr11:86385200-86411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:86388000-86409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:86389800-86399600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86390000-86403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:86390200-86398600	Weak transcription	Osteobl	bone
8	chr11:86390200-86399800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86390400-86399800	Weak transcription	Fetal Kidney	kidney
10	chr11:86391800-86399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:86392200-86399600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:86393000-86406800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:86393600-86398200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:86393600-86399600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:86393600-86399800	Weak transcription	Aorta	Aorta
16	chr11:86393800-86399800	Weak transcription	Right Ventricle	heart
17	chr11:86393800-86400400	Weak transcription	Pancreas	Pancrea
18	chr11:86394400-86399400	Weak transcription	Right Atrium	heart
19	chr11:86394600-86399400	Weak transcription	Left Ventricle	heart
20	chr11:86397600-86400600	Enhancers	Psoas Muscle	Psoas
21	chr11:86397800-86398400	Enhancers	Fetal Muscle Leg	muscle
22	chr11:86397800-86398400	Enhancers	Ovary	ovary
23	chr11:86397800-86398400	Enhancers	Stomach Smooth Muscle	stomach
24	chr11:86397800-86398600	Enhancers	Fetal Lung	lung
25	chr11:86397800-86398800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:86397800-86400200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:86397800-86400200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:86397800-86400600	Enhancers	HSMMtube	muscle
29	chr11:86397800-86400600	Enhancers	NHDF-Ad	bronchial
30	chr11:86397800-86400800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:86397800-86400800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:86398000-86398600	Weak transcription	HSMM	muscle
33	chr11:86398000-86399000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:86398000-86399000	Enhancers	Fetal Heart	heart
35	chr11:86398000-86399400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:86398000-86400000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:86398000-86400000	Enhancers	Colon Smooth Muscle	Colon
38	chr11:86398000-86400200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:86398000-86400600	Enhancers	NHLF	lung

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