Variant report

Variant	rs7925226
Chromosome Location	chr11:73137362-73137363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73136925..73139085-chr11:73144528..73146950,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1002127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501411	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10751226	1.00[CHB][hapmap]
rs11235770	1.00[CEU][hapmap]
rs11235809	1.00[CEU][hapmap]
rs11544310	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11544311	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821094	0.89[CEU][hapmap]
rs11823913	1.00[CEU][hapmap]
rs11828904	1.00[CEU][hapmap]
rs12099129	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276892	1.00[CEU][hapmap]
rs12285885	1.00[CEU][hapmap]
rs12288753	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12290623	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17244596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17244602	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs17244616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs17310361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs17310374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17851510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1938777	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2027760	0.89[CEU][hapmap]
rs2027761	0.89[CEU][hapmap]
rs2027763	0.89[CEU][hapmap]
rs2298469	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs28400367	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741149	0.89[CEU][hapmap]
rs3741152	0.89[CEU][hapmap]
rs56742470	1.00[AMR][1000 genomes]
rs57354084	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58334887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58564192	0.83[AMR][1000 genomes]
rs60924672	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61345051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592526	0.91[AMR][1000 genomes]
rs7105681	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7110369	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7112924	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114009	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7114376	1.00[CEU][hapmap]
rs7115055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7115806	0.89[CEU][hapmap]
rs7118982	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7122825	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7123985	1.00[CEU][hapmap]
rs7125598	1.00[CEU][hapmap]
rs7125949	0.89[CEU][hapmap]
rs7125978	0.89[CEU][hapmap]
rs7129546	1.00[AMR][1000 genomes]
rs7129990	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs724111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs73542929	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542938	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542990	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73544710	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73544711	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544729	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73544767	0.91[AMR][1000 genomes]
rs73544783	0.83[AMR][1000 genomes]
rs7930454	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7930880	0.89[CEU][hapmap]
rs7934218	1.00[CEU][hapmap]
rs7935948	1.00[CEU][hapmap]
rs7938391	1.00[CEU][hapmap]
rs7941359	1.00[CEU][hapmap]
rs7941454	0.82[EUR][1000 genomes]
rs7944346	1.00[CEU][hapmap]
rs7945825	1.00[CEU][hapmap]
rs7951072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7951174	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7925226	ARHGEF17	cis	Whole Blood	GTEx
rs7925226	CCND1	cis	cerebellum	SCAN
rs7925226	P2RY2	cis	cerebellum	SCAN
rs7925226	RELT	cis	lymphoblastoid	seeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
4	chr11:73118800-73137600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
7	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
8	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
12	chr11:73122800-73139000	Weak transcription	Spleen	Spleen
13	chr11:73122800-73149600	Weak transcription	Gastric	stomach
14	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:73124000-73140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:73126600-73137400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
18	chr11:73127800-73137400	Weak transcription	Right Ventricle	heart
19	chr11:73128000-73137400	Weak transcription	Psoas Muscle	Psoas
20	chr11:73128200-73137400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:73128400-73137400	Weak transcription	NH-A	brain
22	chr11:73128600-73139400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:73128600-73139400	Weak transcription	NHDF-Ad	bronchial
24	chr11:73129200-73137400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:73129600-73140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:73129600-73147000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:73129600-73149400	Weak transcription	Liver	Liver
29	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
30	chr11:73129800-73141200	Weak transcription	Fetal Brain Male	brain
31	chr11:73130400-73141200	Weak transcription	Pancreas	Pancrea
32	chr11:73130600-73139200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:73130600-73139400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:73130600-73141000	Weak transcription	Thymus	Thymus
35	chr11:73130800-73140000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:73130800-73140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:73130800-73150000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:73131000-73138800	Weak transcription	Fetal Thymus	thymus
39	chr11:73131000-73140400	Weak transcription	Fetal Intestine Large	intestine
40	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:73131200-73137600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:73131200-73142800	Weak transcription	Brain Germinal Matrix	brain
43	chr11:73131200-73143200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:73131200-73149800	Weak transcription	Fetal Brain Female	brain
45	chr11:73131400-73141200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:73131600-73140000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:73131600-73145600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:73131800-73137400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:73131800-73138400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:73131800-73140000	Weak transcription	Dnd41	blood

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