Variant report

Variant	rs7925336
Chromosome Location	chr11:101739804-101739805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10501990	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10736621	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10750622	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791523	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10791524	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10791535	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791539	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791540	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10895192	1.00[ASN][1000 genomes]
rs10895202	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1372415	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1441932	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1815903	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1815904	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1815905	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939028	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1939031	1.00[ASN][1000 genomes]
rs1939033	0.80[AMR][1000 genomes]
rs1939036	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1939041	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939044	1.00[ASN][1000 genomes]
rs1939045	1.00[ASN][1000 genomes]
rs1939056	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1939063	1.00[ASN][1000 genomes]
rs1939069	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939070	1.00[ASN][1000 genomes]
rs1939461	1.00[ASN][1000 genomes]
rs2000535	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2155064	1.00[ASN][1000 genomes]
rs2155066	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2186611	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4084123	1.00[ASN][1000 genomes]
rs4237604	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4237605	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445600	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576789	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620692	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754021	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754027	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754031	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754799	1.00[ASN][1000 genomes]
rs4754800	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4754802	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754805	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754810	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754812	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754814	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6590920	1.00[ASN][1000 genomes]
rs6590923	1.00[ASN][1000 genomes]
rs7101850	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7117680	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7941166	1.00[ASN][1000 genomes]
rs7950837	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894256	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs894257	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs947993	1.00[ASN][1000 genomes]
rs947994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101737800-101743000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:101738200-101741200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:101738200-101743200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:101738400-101740400	Weak transcription	Small Intestine	intestine
5	chr11:101738600-101740400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:101738600-101740600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:101738800-101740200	Weak transcription	NHDF-Ad	bronchial
8	chr11:101738800-101740600	Weak transcription	HMEC	breast
9	chr11:101738800-101740800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:101738800-101741000	Enhancers	A549	lung
11	chr11:101738800-101741200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:101739000-101740600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:101739000-101740600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:101739000-101740800	Weak transcription	NHLF	lung
15	chr11:101739000-101741000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:101739000-101741000	Weak transcription	HSMM	muscle
17	chr11:101739200-101740600	Weak transcription	Hela-S3	cervix
18	chr11:101739200-101740600	Weak transcription	Osteobl	bone
19	chr11:101739200-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:101739200-101741200	Weak transcription	NH-A	brain
21	chr11:101739200-101741400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:101739400-101740600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links