Variant report

Variant	rs7926020
Chromosome Location	chr11:67089826-67089827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67088208..67091047-chr11:67138396..67140194,2	MCF-7	breast:
2	chr11:67087147..67090755-chr11:67140887..67143094,4	MCF-7	breast:
3	chr11:67088729..67091656-chr11:67105990..67108067,2	K562	blood:
4	chr11:67088738..67091729-chr11:67113065..67116327,3	MCF-7	breast:
5	chr11:67032012..67034132-chr11:67089605..67092011,2	K562	blood:
6	chr11:67087454..67090375-chr11:67115840..67118450,2	MCF-7	breast:
7	chr11:67076937..67081863-chr11:67086712..67091272,5	K562	blood:
8	chr11:67083205..67091159-chr11:67142322..67150295,9	MCF-7	breast:
9	chr11:67089180..67091278-chr11:67103775..67106325,2	MCF-7	breast:
10	chr11:67088738..67090826-chr11:67092004..67094018,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175505	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000256514	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17882894	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17882925	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17885120	1.00[AMR][1000 genomes]
rs2422488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364251	0.93[AFR][1000 genomes]
rs61743296	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61746685	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123483	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951800	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7926020	GSTP1	cis	lymphoblastoid	seeQTL

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67086000-67090800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:67086000-67104400	Weak transcription	Aorta	Aorta
3	chr11:67086200-67090200	Weak transcription	Placenta	Placenta
4	chr11:67086200-67092200	Weak transcription	HSMMtube	muscle
5	chr11:67086200-67097400	Weak transcription	Primary T cells from cord blood	blood
6	chr11:67086200-67101400	Weak transcription	Colonic Mucosa	Colon
7	chr11:67086200-67113600	Weak transcription	Osteobl	bone
8	chr11:67086400-67098000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:67086400-67100400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:67086400-67102800	Weak transcription	Liver	Liver
11	chr11:67086400-67104000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:67086400-67110200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:67086400-67111200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:67086400-67111600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:67086400-67112600	Weak transcription	Fetal Lung	lung
16	chr11:67086400-67120000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:67086600-67090000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:67086600-67090200	Weak transcription	Fetal Intestine Large	intestine
19	chr11:67086600-67091000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:67086600-67091400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:67086600-67096000	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:67086600-67097800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:67086600-67099600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:67086600-67100600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:67086600-67103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:67086600-67111200	Weak transcription	Primary B cells from cord blood	blood
27	chr11:67086600-67111200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:67086600-67118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:67086800-67091200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:67086800-67092800	Weak transcription	Dnd41	blood
31	chr11:67086800-67099000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:67086800-67099000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:67086800-67100200	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:67086800-67101200	Weak transcription	A549	lung
35	chr11:67086800-67118800	Weak transcription	Fetal Brain Male	brain
36	chr11:67087000-67092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:67087000-67099000	Weak transcription	NHEK	skin
38	chr11:67087000-67100400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:67087000-67101200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:67087000-67111800	Weak transcription	Gastric	stomach
41	chr11:67087000-67112800	Weak transcription	Hela-S3	cervix
42	chr11:67087000-67113400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:67087800-67113800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:67087800-67119000	Weak transcription	Fetal Brain Female	brain
45	chr11:67088000-67103000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:67088200-67101400	Weak transcription	Ovary	ovary
47	chr11:67088400-67090200	Weak transcription	Brain Angular Gyrus	brain
48	chr11:67088400-67091200	Strong transcription	Fetal Stomach	stomach
49	chr11:67088400-67100800	Weak transcription	Right Ventricle	heart
50	chr11:67088600-67091000	Genic enhancers	Fetal Intestine Small	intestine

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