Variant report

Variant	rs79267012
Chromosome Location	chr6:150183287-150183288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150181876-150186422	IMR90	lung:	n/a	n/a
2	CHD1	chr6:150181747-150185902	IMR90	lung:	n/a	chr6:150185305-150185315
3	POLR2A	chr6:150181143-150183681	HepG2	liver:	n/a	n/a
4	MAFK	chr6:150182648-150183826	IMR90	lung:	n/a	chr6:150183213-150183224 chr6:150183651-150183666
5	POLR2A	chr6:150181811-150186475	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr6:150183122-150183342	A549	lung:	n/a	n/a
7	POLR2A	chr6:150183248-150183653	MCF10A-Er-Src	breast:	n/a	n/a
8	CTCF	chr6:150183220-150183370	HBMEC	blood vessel:	n/a	n/a
9	POLR2A	chr6:150180156-150183754	HepG2	liver:	n/a	n/a
10	TCF7L2	chr6:150183147-150183571	PANC-1	pancreas:	n/a	chr6:150183297-150183306 chr6:150183294-150183310 chr6:150183294-150183310

No.	Distal block	Cell Line	Cell type
1	chr6:150183161..150188305-chr6:150206346..150214162,9	MCF-7	breast:
2	chr6:150037075..150038991-chr6:150181496..150184249,2	K562	blood:
3	chr6:150181490..150187274-chr6:150243970..150248410,8	MCF-7	breast:
4	chr6:150036146..150038991-chr6:150182749..150185016,3	K562	blood:
5	chr6:150180705..150183477-chr6:150200209..150201991,2	K562	blood:

Variant related genes	Relation type
ENSG00000268592	TF binding region
ENSG00000217733	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000164520	Chromatin interaction
ENSG00000223701	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3437961	chr6:150182459-150187257	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150168800-150183400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:150173000-150184200	Weak transcription	Aorta	Aorta
3	chr6:150176600-150183400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:150176800-150183400	Weak transcription	HSMMtube	muscle
5	chr6:150178600-150184000	Weak transcription	Psoas Muscle	Psoas
6	chr6:150178800-150183400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:150180200-150183400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:150180600-150183600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150180600-150183600	Enhancers	Gastric	stomach
10	chr6:150180600-150184200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150181200-150183600	Enhancers	Esophagus	oesophagus
12	chr6:150181200-150183800	Enhancers	Fetal Muscle Leg	muscle
13	chr6:150181200-150183800	Enhancers	Placenta	Placenta
14	chr6:150181200-150183800	Enhancers	Pancreas	Pancrea
15	chr6:150181200-150183800	Flanking Active TSS	Hela-S3	cervix
16	chr6:150181200-150184000	Enhancers	Liver	Liver
17	chr6:150181400-150183400	Enhancers	HMEC	breast
18	chr6:150181600-150183400	Strong transcription	Fetal Stomach	stomach
19	chr6:150181800-150183800	Enhancers	Adipose Nuclei	Adipose
20	chr6:150181800-150183800	Enhancers	Brain Germinal Matrix	brain
21	chr6:150182000-150183400	Enhancers	Lung	lung
22	chr6:150182000-150183400	Enhancers	NH-A	brain
23	chr6:150182000-150184000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr6:150182000-150184000	Enhancers	Left Ventricle	heart
25	chr6:150182000-150184000	Enhancers	Stomach Mucosa	stomach
26	chr6:150182000-150186200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:150182200-150183400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:150182200-150183400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:150182200-150183600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
30	chr6:150182200-150184200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:150182200-150184200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:150182400-150183400	Enhancers	Duodenum Mucosa	Duodenum
33	chr6:150182400-150183600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:150182400-150183600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:150182400-150183800	Flanking Active TSS	Osteobl	bone
36	chr6:150182400-150184200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:150182600-150183400	Transcr. at gene 5' and 3'	NHEK	skin
38	chr6:150182600-150183800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:150182600-150183800	Enhancers	Fetal Muscle Trunk	muscle
40	chr6:150182600-150184000	Enhancers	Dnd41	blood
41	chr6:150182800-150183400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:150182800-150183800	Flanking Active TSS	HepG2	liver
43	chr6:150183000-150183400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:150183000-150183400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:150183000-150183400	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:150183000-150183400	Enhancers	Stomach Smooth Muscle	stomach
47	chr6:150183000-150183400	Transcr. at gene 5' and 3'	A549	lung
48	chr6:150183000-150183400	Enhancers	HUVEC	blood vessel
49	chr6:150183000-150183600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:150183000-150183600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links